BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1596 0.0
>3x_Contig1716
Length = 19108
Score = 1596 bits (805), Expect = 0.0
Identities = 869/885 (98%), Gaps = 4/885 (0%)
Strand = Plus / Minus
Query: 48 cgcgtgacagtgtcaacaagaaaa-cagtgacgaaaactttcagaattattccttaacag 106
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4808 cgcgtgacagtgtcaacaagaaaaacagtgacgaaaactttcagaattattccttaacag 4749
Query: 107 aagatcattttgagatgaatcccgactgctctgacatcaaatcaattattctagaatggt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4748 aagatcattttgagatgaatcccgactgctctgacatcaaatcaattattctagaatggt 4689
Query: 167 ttaccccaaatcgtgaatgcgtgcattcgatgaacaagaaatatggaaacaaatggcgac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4688 ttaccccaaatcgtgaatgcgtgcattcgatgaacaagaaatatggaaacaaatggcgac 4629
Query: 227 tgacagaaccaaatctgtccttgtacaggatacggaagccaattgttcagtattacatac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4628 tgacagaaccaaatctgtccttgtacaggatacggaagccaattgttcagtattacatac 4569
Query: 287 atctaatcaatgtagaaaacctcaataagtttgacgcattgaataagctcgaagccgtgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 atctaatcaatgtagaaaacctcaataagtttgacgcattgaataagctcgaagccgtgc 4509
Query: 347 tcgaaaagcatcactccgttccgcttctctcttccttcttggagaaagccaagaaaaacg 406
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508 tcgaaaagcaacactccgttccgcttctctcttccttcttggagaaagccaagaaaaacg 4449
Query: 407 gctatgcatctgtcacgtgaacattttttgttaagcatgcttactttgcatgaggtacat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4448 gctatgcatctgtcacgtgaacattttttgttaagcatgcttactttgcatgaggtacat 4389
Query: 467 aaatgaaaaccgtataatagaaaattgtaaccatatttagcaacgaagcagtaaagttgc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388 aaatgaaaaccgtataatagaaaattgtaaccatatttagcaacgaagcagtaaagttgc 4329
Query: 527 ttctgaacaaagtcataactagctaagaacctttcagtatttacttgaaaagaaaactat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4328 ttctgaacaaagtcataactagctaagaacctttcagtatttacttgaaaagaaaactat 4269
Query: 587 aacgagcctgatgagattatgagattctatatattgtttttgtacctatttggtactcta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4268 aacgagcctgatgagattatgagattctatatattgtttttgtacctatttggtactcta 4209
Query: 647 gtagcggccatccatcttgatgacccgcttactaacttcaactttactcctcctataaaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4208 gtagcggccatccatcttgatgacccgcttactaacttcaactttactcctcctataaaa 4149
Query: 707 tctcctaacgaccttctggaccacgagcggacgtttactgacggtgaaattcc-aggtat 765
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 4148 tctcctaacgaccttctggaccacgagcggacgttaactgacggtgaaattccaaggtat 4089
Query: 766 gttctagatcattcaccgttgatccatctttacagcgaagaaaaatttcttccaggagac 825
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4088 gttctagatcattcaccgttgatccatctttacagcgaagaaaaatatcttccaggagac 4029
Query: 826 atccaatcctttgtaccgcactttcaattggtaacttcg-attttgagacggttgt-aat 883
||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||
Sbjct: 4028 atccaatcctttgtaccgcactttcaattggtaacatcgaattatgagacggttgtaaat 3969
Query: 884 gaacctctggaaaattcagatcttaagggtggatttaccgttgca 928
||||||||| ||| |||||||| ||||||| || || |||||||
Sbjct: 3968 gaacctctgaaaatatcagatctcaagggtgaatataacgttgca 3924
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7057
Number of Sequences: 1807
Number of extensions: 7057
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)