BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA09FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 1181 0.0
>3x_Contig1069
Length = 3994
Score = 1181 bits (596), Expect = 0.0
Identities = 664/679 (97%), Gaps = 6/679 (0%)
Strand = Plus / Minus
Query: 83 taagaatcggtacatgtgcggtttttcccctccaattagaaatttccttaccatcacgta 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3421 taagaatcggtacatgtgcggtttttcccctccaattagaaatttccttaccatcacgta 3362
Query: 143 attccaaattccataatacacacttgacagcttctcaaactaattttcccataagcaaaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3361 attccaaattccataatacacacttgacagcttctcaaactaattttcccataagcaaaa 3302
Query: 203 aatcagaataaaagctcacaaggaaaaataccgaaaaaaaaataaatgggacagtagatt 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3301 aatcagaataaaagcacacaaggaaaaataccgaaaaaaaaataaatgggacagtagatt 3242
Query: 263 aggtccatgaaaaccatagaaagggatatattagaatattctcagttgagataaaaggtt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3241 aggtccatgaaaaccatagaaagggatatattagaatattctcagttgagataaaaggtt 3182
Query: 323 ttcgcagacaccagtggttgtttttatttacacattacgctactctatcaaggtgctaat 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3181 ttcgcagacaccagtggttgtttttatttacacattacgctactctatcaaggtgctaat 3122
Query: 383 ttaaataccggttatttgttgtggaaatacacattcatttcaagcgggaacagtttttgt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3121 ttaaataccggttatttgttgtggaaatacacattcatttcaagcgggaacagtttttgt 3062
Query: 443 tttcccatacagagagatttttctttctaatttctggcaatagttttcaaaagcgttcgg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 tttcccatacagagagatttttctttctaatttctggcaatagttttcaaaagcgttcgg 3002
Query: 503 tgaccagcacctgttcttccaattttaattagttagcgactgcttaatcgtttcgtggtt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 tgaccagcacctgttcttccaattttaattagttagcgactgcttaatcgtttcgtggtt 2942
Query: 563 gatttgtatcgatattcagacaacttgggaatcaaatgagtccaataactcctcactctc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 gatttgtatcgatattcagacaacttgggaatcaaatgagtccaataactcctcactctc 2882
Query: 623 cggagagccagcccctctttgggtgtcccctanatttgtgaattcttggcgaaacaagaa 682
||||||||||| |||||||| ||||||||||| ||||||||| |||||||||| |||||
Sbjct: 2881 cggagagccag-ccctcttt-ggtgtcccctagatttgtgaa-tcttggcgaacaaagaa 2825
Query: 683 attcagagatgcttaattcgacaggtagcgctggttggatcgtttgctttttcagactac 742
||||||||||||| |||||||||||||||||| |||||||||| ||| || |||||||||
Sbjct: 2824 attcagagatgctcaattcgacaggtagcgct-gttggatcgtctgc-ttctcagactac 2767
Query: 743 gttttccggtcaattaacc 761
| | |||||||||| ||||
Sbjct: 2766 g-tctccggtcaataaacc 2749
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6802
Number of Sequences: 1807
Number of extensions: 6802
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)