BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA09RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1302 0.0
>3x_Contig1321
Length = 8217
Score = 1302 bits (657), Expect = 0.0
Identities = 691/700 (98%), Gaps = 2/700 (0%)
Strand = Plus / Minus
Query: 40 acatctggaatggcgatgagatgagcttgagatgagctacgacaactagaataacttagc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3708 acatctggaatggcgatgagatgagcttgagatgagctacgacaactagaataacttagc 3649
Query: 100 agtgagtactgttcattgttccttattataacttctacaggtgacatactatttatctag 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3648 agtgagtactgttcattgttccttattataacttctacaggtgacatactatttatctag 3589
Query: 160 tgctattattcttcactcatttctactttgcgagaaagaatagaattcttgttgttcttt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3588 tgctattattcttcactcatttctactttgcgagaaagaatagaattcttgttgttcttt 3529
Query: 220 gattgagtattaaggtaagtggaaaataaagagatatacggcattcgttaatatggctgt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3528 gattgagtattaaggtaagtggaaaataaagagatatacggcattcgttaatatggctgt 3469
Query: 280 taagaagtttagatcattcgatgattttgttcctacaattagtgatagcgaagaagatgt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3468 taagaagtttagatcattcgatgattttgttcctacaattagtgatagcgaagaagatgt 3409
Query: 340 tccagatttagatgcttctgatgacgaaatggaaaagaagccagtgaagtcctcaaaaac 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3408 tccagatttagatgcttctgatgacgaaatggaaaagaagccagtgaagtcctcaaaaac 3349
Query: 400 taagaacaaatctaaaaagaaggccaagcaacaacagggatctcacttggacgaagatgt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3348 taagaacaaatctaaaaagaaggccaagcaacaacagggatctcacttggacgaagatgt 3289
Query: 460 ccatgaagatttgaatccagaattccaattctccattgacagcggagaagttaccaccaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3288 ccatgaagatttgaatccagaattccaattctccattgacagcggagaagttaccaccaa 3229
Query: 520 ctttgcaggctgggatttccaaggtgatgagaagagtgatgaagttga-aaaaaagatgt 578
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3228 ctttgcaggctgggatttccaaggtgatgagaagagtgatgaagttgagaaaaaagatgt 3169
Query: 579 cgatctagatgggatcattagaagaaaaggtggtttgattatgatggctgctacaggcag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 cgatctagatgggatcattagaagaaaaggtggtttgattatgatggctgctacaggcag 3109
Query: 639 tgatgccgaagaaagcctatcagaagagtccgaagaagacccagaag-atgagacgaccc 697
||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| ||
Sbjct: 3108 tgatgccgaagaaagcctatcagaagagtccgaagaagaaccagaagaaggagacgaacc 3049
Query: 698 ttgcgagagtggtgatgaanatgaattacctttggatggg 737
| ||||||||| ||||||| |||||||| |||||||||||
Sbjct: 3048 tggcgagagtgatgatgaagatgaattagctttggatggg 3009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8209
Number of Sequences: 1807
Number of extensions: 8209
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)