BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA11RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig288 1338 0.0
>3x_Contig288
Length = 1699
Score = 1338 bits (675), Expect = 0.0
Identities = 774/797 (97%), Gaps = 9/797 (1%)
Strand = Plus / Minus
Query: 45 agcttcgaacaaatggtattggtattgcaactaaccatagacgcatttcgctagggttcg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 agcttcgaacaaatggtattggtattgcaactaaccatagacgcatttcgctagggttcg 1352
Query: 105 atttagtgagcagagacaagaagaatccgttattacggaagtatttaaggaaacgcagac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 atttagtgagcagagacaagaagaatccgttattacggaagtatttaaggaaacgcagac 1292
Query: 165 atcgtgggttgaggcgagggttgcatccagatgagcaaggtagttatcacactttggttg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1291 atcgtgggttgaggcgagggttgcatccagatgagcaaggtagttatcacactttggatg 1232
Query: 225 aggattttggaagcagtgttagagaaccgtctgtttacgacgatttagacgaagttttgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 aggattttggaagcagtgttagagaaccgtctgtttacgacgatttagacgaagttttgg 1172
Query: 285 aagatatagatgagtacgatgaggacggagaacccttaagtcggacggtgtcattgccct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 aagatatagatgagtacgatgaggacggagaacccttaagtcggacggtgtcattgccct 1112
Query: 345 cgagggtatcagaaccaagcaacgtatcacaacaaaatcttgattggctcttagaggagc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 cgagggtatcagaaccaagcaacgtatcacaacaaaatcttgattggctcttagaggagc 1052
Query: 405 acgagagaaggttctcatcatcgcagaacagtgagaacgacgaagatgaggaccttgaga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 acgagagaaggttctcatcatcgcagaacagtgagaacgacgaagatgaggaccttgaga 992
Query: 465 atgggacctcagaacaagcggatgtaatagcatatgacgactttatgcaccgggtcagac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 atgggacctcagaacaagcggatgtaatagcatatgacgactttatgcaccgggtcagac 932
Query: 525 agcaattgcaacaagacttccatgatagagcatatgcaggtggtgctggcggtagtggtg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 agcaattgcaacaagacttccatgatagagcatatgcaggtggtgctggcggtagtggtg 872
Query: 585 cangcggtcccaacaggagacgtgggtcgctaatatcagtaactagtcgaggttcagtac 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 caggcggtcccaacaggagacgtgggtcgctaatatcagtaactagtcgaggttcagtac 812
Query: 645 cggcagtatttcaagatgtgggcagctatgaaagaagaagatttaagccatgctaaagtt 704
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 811 cgcaggtatttcaagatgtgggcagc-atgaaagaagaagatttaagccatgctaaagta 753
Query: 705 acccgcaatagtgaactcaaagtgttgggcttcgtattcaatccccattgattttcactt 764
||| |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 752 accgcaaatagt-aactcaaagtgtt-ggcatcgtattcaat-cccattgattttcactt 696
Query: 765 tcttattggaacaaatgttcccccgtggtattgcctcgttacgggtgggtcatttggggg 824
||||||||||||| ||||| ||||||||||| ||||||| |||||||||||| ||||
Sbjct: 695 tcttattggaacagatgtt-ccccgtggtat--gctcgttaacggtgggtcattt-gggg 640
Query: 825 aggacaagaattggcag 841
||||| |||||||||||
Sbjct: 639 aggac-agaattggcag 624
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6194
Number of Sequences: 1807
Number of extensions: 6194
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)