BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA12FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1205 0.0
>3x_Contig1726
Length = 20144
Score = 1205 bits (608), Expect = 0.0
Identities = 661/672 (98%), Gaps = 5/672 (0%)
Strand = Plus / Plus
Query: 86 ctaaaaagaaccaaaacgaattgatggttttgaagatgtcccaattggctaaaactttag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9269 ctaaaaagaaccaaaacgaattgatggttttgaagatgtcccaattggctaaaactttag 9328
Query: 146 taaaggaagacgaagatgagaacgattgtgaagatgaggatgaggatggcacggaccctg 205
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9329 taaaggaagacgaagatgagaacgaaggtgaagatgaggatgaggatggcacggaccctg 9388
Query: 206 tcattgagatagataacttttcccttaaggacactaccaatagattgaaagtgtctcctt 265
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389 tcattgagaatgaaaacatttcccttaaggacactaccaatagattgaaagtgtctcctt 9448
Query: 266 ttgccaatgcagctcaagaggtattgtgtagcactatgtctgaaaatggggaagtatata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9449 ttgccaatgcagctcaagaggtattgtgtagcactatgtctgaaaatggggaagtatata 9508
Query: 326 tttttgatctggcttctcaggtgaaagcctttgagactcctggataccaaatcccaaagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9509 tttttgatctggcttctcaggtgaaagcctttgagactcctggataccaaatcccaaagc 9568
Query: 386 aagccaaaagacccatccatactgtaagaaatcatgggagtgtcgaaggttacgctaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9569 aagccaaaagacccatccatactgtaagaaatcatgggagtgtcgaaggttacgctaatg 9628
Query: 446 attggtctccaattataaaaactggtgcaatgctatcgggtgattgctctggccaagtct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9629 attggtctccaattataaaaactggtgcaatgctatcgggtgattgctctggccaagtct 9688
Query: 506 tcttaactcaaagacatacttccaagtggattactgataaacaagcctttacggttgcta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9689 tcttaactcaaagacatacttccaagtggattactgataaacaagcctttacggttgcta 9748
Query: 566 ataataaatctatcgaagacttgcaatggtctcgtacagaatcgactgtattcgcttcgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9749 ataataaatctatcgaagacttgcaatggtctcgtacagaatcgactgtattcgcttcgt 9808
Query: 626 gtggtattgacggatatatcagaatttgggacactcgttct-aaaaacacaagccagcca 684
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9809 gtggtattgacggatatatcagaatttgggacactcgttctaaaaaacacaagccagcca 9868
Query: 685 tttcgggttaaggcgtcaaatacagatgtaaatgttataagtttggagtgaagaagattg 744
|||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 9869 tttc-ggttaaggcgtcaaatacagatgtaaatgttataag-ttggagtg-agaagatt- 9924
Query: 745 ggatacctactt 756
||||||||||||
Sbjct: 9925 ggatacctactt 9936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6308
Number of Sequences: 1807
Number of extensions: 6308
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)