BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1080 0.0
>3x_Contig1168
Length = 4574
Score = 1080 bits (545), Expect = 0.0
Identities = 649/673 (96%), Gaps = 8/673 (1%)
Strand = Plus / Minus
Query: 44 gcttcccccaa-tgatattagttttgacagaatcaaagaaagaagacgctgttttcaata 102
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3265 gcttcccccaaatgatattagtttcgacagaatcaaagaaagaagacgctgttttcaata 3206
Query: 103 ctaattgattgtccgagtactctctgcatttctcgataagtgggatgaatattttcggtg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 ctaattgattgtccgagtactctctgcatttctcgataagtgggatgaatattttcggtg 3146
Query: 163 ttaaataagatccaatttgccagcgatccatcaacgcagacacgattttgtattctttta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 3145 ttaaataagatccaatttgccagcgatccatcaacgcagacacgattttgtaagcatcga 3086
Query: 223 tgcacgtctgagggtgttcgagcatctcatgcaatccgcctaacaaatgttgagcaccgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tgcacgtctgagggtgttcgagcatctcatgcaatccgcctaacaaatgttgagcaccgt 3026
Query: 283 tcttgataaaatactcggaatcgctatgatctccagattctggatctagtactggtccaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 tcttgataaaatactcggaatcgctatgatctccagattctggatctagtactggtccaa 2966
Query: 343 gcagccagttccatattcttctattgagagacatgtcttttttcaacattgttctgcatg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 gcagccagttccatattcttctattgagagacatgtcttttttcaacattgttctgcatg 2906
Query: 403 ccgtcatgattaagagccgacagtcggaaggtttaactaacacttgcaacaatggtgaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 ccgtcatgattaagagccgacagtcggaaggtttaactaacacttgcaacaatggtgaat 2846
Query: 463 gcaaatgcaacctttgcaaaagtaagtccaaaatacctctttggattaggatttcgttct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2845 gcaaatgcaacctttgcaaaagtaagtccaaaatacctctttggattaggatttcgttct 2786
Query: 523 catcttc-agacatcttaacaaagatcttattagcaaacctggctcgggtgaaactactg 581
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2785 catcttcaagacatctaacaaaagatcttattagcaaacctggctcgggtgaaactactg 2726
Query: 582 gttttggaggcatcgagtaacaacgacaaagcaaatttttttcctctccttcgaatcctt 641
| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct: 2725 g-tttggaggcatcgagtaacaacgacaaagcaaa-ttctttcctctccttcgaatcc-t 2669
Query: 642 ttttagtttaaagctgggtcctttttcttttgcagctaaaagaggaacctgcttttaacg 701
|||||| ||||||||| |||| ||||| |||||||||||| |||||| |||| |||||||
Sbjct: 2668 ttttag-ttaaagctgtgtcc-ttttcctttgcagctaaatgaggaa-ctgcatttaacg 2612
Query: 702 atgggtacttttt 714
|||| |||||||
Sbjct: 2611 atggtaacttttt 2599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8609
Number of Sequences: 1807
Number of extensions: 8609
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)