BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB01FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 979 0.0
>3x_Contig1553
Length = 8593
Score = 979 bits (494), Expect = 0.0
Identities = 588/614 (95%), Gaps = 4/614 (0%)
Strand = Plus / Minus
Query: 89 taataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggttg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 taataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggttg 1063
Query: 149 ttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcctt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcctt 1003
Query: 209 gctggaacctttttttaaagaactgatcaactcaatagtaatatcggaacaacattgcaa 268
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gctggaaccaccagttaaagaactgatcaactcaatagtaatatcggaacaacattgcaa 943
Query: 269 gaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttgcg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttgcg 883
Query: 329 acccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttgaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 acccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttgaa 823
Query: 389 ccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaaccg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaaccg 763
Query: 449 agcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 agcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgctg 703
Query: 509 gaagatgatttttttttatcgaatttcagtcttttttttttttaccgccataataaaccg 568
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct: 702 gaagatga-ttttttttatcgaatttcagtctttttttcttttaccgtcatagtaaaccg 644
Query: 569 gtagccatttagtattttggccaagcttgtaaaaaaattaattgtcccggttatttaatt 628
|||||||||||||| ||||||||||| ||| |||||||||||| |||| || |||| |
Sbjct: 643 ttagccatttagtatcttggccaagctgttaagaaaattaattgt-ccgggtaattaaat 585
Query: 629 attcggaccacatgacctttgaataaatggtctttccctctcgtgttttcagtattattc 688
|| || ||||||||||| ||||||||| ||||||||||||||||||| |||||| |||
Sbjct: 584 atccgtaccacatgacc-ttgaataaactgtctttccctctcgtgtttacagtatgatt- 527
Query: 689 ccaaagatttgaat 702
||||||||||||||
Sbjct: 526 ccaaagatttgaat 513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,300
Number of Sequences: 1807
Number of extensions: 16300
Number of successful extensions: 400
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)