BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB01RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 553 e-157
3x_Contig1271 432 e-121
>3x_Contig1331
Length = 5830
Score = 553 bits (279), Expect = e-157
Identities = 356/376 (94%), Gaps = 6/376 (1%)
Strand = Plus / Minus
Query: 310 cttcgattcagtgttatatagtacgccaagctgtgtcaggcactctttagttggaacgta 369
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5830 cttcgattcagttttatttagtacgccaagctgtgtcaggcactctttagttggaacgta 5771
Query: 370 aattacaggcgggagaggtggatattctaattgtccgtttttgttacgcttgattccacc 429
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5770 aagtacaggcgggagaggtggatattctaattgtccgtttttgttacgcttgattccacc 5711
Query: 430 gtagttctgataaaaactcttagcgttcttggctatctcacgttcttggtaaattaattg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5710 gtagttctgataaaaactcttagcgttcttggctatctcacgttcttggtaaattaattg 5651
Query: 490 ttcaacgtgcttcatgtatgacttggngccaggggtaatatctattgggttagatatttc 549
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct: 5650 ttcaacgtgcttcatgtatgacttgggccaaggggtaatatctattgggtaagatatttc 5591
Query: 550 aaaa-ccttacctttagaatttttg-attttatgtttaaagagtgggtgacccgaaaaaa 607
|||| |||||||||||||| ||||| |||| ||||||||||||||||||| |||| ||||
Sbjct: 5590 aaaatccttacctttagaaattttgaatttaatgtttaaagagtgggtga-ccgagaaaa 5532
Query: 608 gtttacctctagtggtaatggaacaatgatacttgaaaagtntctttactatgttttccc 667
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct: 5531 gtttacctctagtggtaatggaacaatgatac-tgaaaaggttctttactatgtttacc- 5474
Query: 668 ttttaggaacaacagt 683
|||| ||||||||||
Sbjct: 5473 -tttaagaacaacagt 5459
>3x_Contig1271
Length = 7459
Score = 432 bits (218), Expect = e-121
Identities = 240/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 42 gctttgggtttaacggccttgtgctatttctgcttcc-tagtggttcaccggagccctat 100
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7209 gctttgggtttaacggccttgtgctatttctgcttccatagtggttcaccggagccctat 7268
Query: 101 aatccgacattgcaaggttttgtgtagattcctggttgctgtttcctatgtgctactggt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7269 aatccgacattgcaaggttttgtgtagattcctggttgctgtttcctatgtgctactggt 7328
Query: 161 gagacttgtttttattgatgctaagttttaaaggtacataatccatcttttttcttatac 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 7329 gagacttgtttttattgatgctaagttttaaaggtacataatccatcttttttcataaac 7388
Query: 221 taacataaatgttacaacagttattcatttcaatacgctatatatgtatatttaatgcat 280
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 7389 taacataaatgttacaacagttattcatttcaatacgctatatatgtatattttattcgt 7448
Query: 281 taatct 286
||||||
Sbjct: 7449 taatct 7454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,963
Number of Sequences: 1807
Number of extensions: 14963
Number of successful extensions: 170
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)