BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB02RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig905 1310 0.0
3x_Contig1017 186 5e-47
3x_Contig1237 103 6e-22
3x_Contig1622 101 2e-21
>3x_Contig905
Length = 2723
Score = 1310 bits (661), Expect = 0.0
Identities = 697/707 (98%), Gaps = 2/707 (0%)
Strand = Plus / Minus
Query: 52 cttatataaaaagaattaacgtttacttcagttttatgatgtagtaatatttgagtatag 111
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1992 cttatataaaaagaattaacgttcacttcagttttatgatgtagtaatatttgagtatag 1933
Query: 112 cattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatccc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 cattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatccc 1873
Query: 172 aagattatatttgtggatttgcgttgatttaaagaggtttttaagcaacattcatanatt 231
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1872 aagatta-atttgtggatttgcgttgatttaaagaggtttttaagcaacattcatataaa 1814
Query: 232 tgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgtt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgtt 1754
Query: 292 gggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 gggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaat 1694
Query: 352 tacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctgc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 tacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctgc 1634
Query: 412 taaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatata 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 taaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatata 1574
Query: 472 atatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatacc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 atatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatacc 1514
Query: 532 ctgngcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggccat 591
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 ctgggcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggccat 1454
Query: 592 ctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttccag 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 ctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttccag 1394
Query: 652 ttctgaaactggattttggttctctggtaacgacataataacgattgctgtcaccaaaga 711
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1393 ttctgaaactggattttggttctctggtaacgacatatcaacgattgctgtcaccaaaga 1334
Query: 712 tagaatcgtattagtgaatcctggggtcgttgaaaataataggggtt 758
|||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1333 tagattcgtattagtgaatcct-gggtcgttgaaaataataggggtt 1288
>3x_Contig1017
Length = 3431
Score = 186 bits (94), Expect = 5e-47
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 241 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 aaattttggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1869
Query: 301 ccgcgctggttcaaatcctgctggtgtcgttatttttt 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1907
>3x_Contig1237
Length = 6632
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 285 atctgttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 340
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atctcttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 2070
>3x_Contig1622
Length = 13445
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 245 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 304
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 4244 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 4303
Query: 305 gctggttcaaatcctgctggtgtcgttattttttt 339
|| ||||| | |||||||| |||||||||||||||
Sbjct: 4304 gcaggttcgagtcctgctgttgtcgttattttttt 4338
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8057
Number of Sequences: 1807
Number of extensions: 8057
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 4
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)