BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZB03FM1.SCF screened BAC_end (936 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1487 100 1e-20 >3x_Contig1487 Length = 9002 Score = 99.6 bits (50), Expect = 1e-20 Identities = 116/132 (87%), Gaps = 6/132 (4%) Strand = Plus / Plus Query: 717 ttagtactaccaaa--gaggattggaa-gcgttgacaaatttgcccgttagcataagagg 773 |||||||||||||| ||||||||||| |||||||||||||||||||| |||| |||| Sbjct: 11 ttagtactaccaaatagaggattggaaagcgttgacaaatttgcccgtagccata-gagg 69 Query: 774 ggatttagtttatcttttcattagtcaccggtnattccagtgatattggttgtttcagaa 833 |||| ||||||||| |||||||||||||||| | |||||||||| ||| ||| |||||| Sbjct: 70 tgattcagtttatctcttcattagtcaccggtaa-tccagtgata-tggatgtatcagaa 127 Query: 834 cagaatccgaac 845 ||||||| |||| Sbjct: 128 cagaatcagaac 139 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5794 Number of Sequences: 1807 Number of extensions: 5794 Number of successful extensions: 37 Number of sequences better than 1.0e-20: 1 length of query: 936 length of database: 10,358,551 effective HSP length: 16 effective length of query: 920 effective length of database: 10,329,639 effective search space: 9503267880 effective search space used: 9503267880 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)