BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1237 0.0
>3x_Contig1301
Length = 6951
Score = 1237 bits (624), Expect = 0.0
Identities = 753/783 (96%), Gaps = 10/783 (1%)
Strand = Plus / Minus
Query: 45 gcttgttacagagctgcggcttctgaatgatgtagttctttatagtatcaaaatcgatct 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1937 gcttgttacagagctgcggcttcggaatgatgtagttctttatagtatcaaaatcgatct 1878
Query: 105 ttccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 ttccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggat 1818
Query: 165 gaaaaagcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggttatag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1817 gaaaaagcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcatag 1758
Query: 225 ctcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 ctcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatc 1698
Query: 285 aattttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 aattttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtc 1638
Query: 345 ggtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatatt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 ggtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatatt 1578
Query: 405 gaacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataatc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 gaacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataatc 1518
Query: 465 aagcttttatccccgattgctccattgatattattggtgacagtttaagtcaataggatt 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1517 aagcttttatccccgattgctccattgatattattggtgacagtttaagtcaatagga-t 1459
Query: 525 tgtagtcttgacatgtttggatactatgangtcctcactaaacaacattgggtagc-aaa 583
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||
Sbjct: 1458 tgtagtcttgacatgtttggatactatgaggtcctcactaaacaacaat-ggtagcaaaa 1400
Query: 584 agcaacaaagtatttagaacaaaagttgttgtgatatatatatatgattttaagaccttt 643
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1399 agcaacaaagtattaag-acaaaagttgttgtgatatatatatatga-tttaagacc-tt 1343
Query: 644 ttattactgagtatctttaagaaggttttggctgtaagttgttgacacctttagctgcat 703
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1342 ttattactgagtatctttaagaaggttttggctgt-aggtgttgaca-ctttagctgcat 1285
Query: 704 cctt-acactattttttgttgaaagtacagtaacaaatgcattggcatttaggactggta 762
|||| |||||| ||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 1284 ccttaacacta-tttttgttgaagtaacagtaacaaatgcattgtcattaaggactggta 1226
Query: 763 atctggaatcccgatgttttaaattaagggaagcattttcaatttttaatttggaagtcg 822
||||||| ||| ||||| | |||| ||||||||||||||||| | ||||| ||||||||
Sbjct: 1225 atctggagtcctgatgtatcaaatagagggaagcattttcaatatataattcggaagtcg 1166
Query: 823 ggc 825
|||
Sbjct: 1165 ggc 1163
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,301
Number of Sequences: 1807
Number of extensions: 10301
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)