BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB04RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1078 0.0
>3x_Contig1724
Length = 20938
Score = 1078 bits (544), Expect = 0.0
Identities = 680/715 (95%), Gaps = 9/715 (1%)
Strand = Plus / Minus
Query: 51 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 9009
Query: 111 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9008 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 8949
Query: 171 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8948 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 8889
Query: 231 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8888 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 8829
Query: 291 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8828 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 8769
Query: 351 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8768 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 8709
Query: 411 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 8649
Query: 471 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8648 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 8589
Query: 531 catattaag-atcc-ttcttctctt-aatccacttggttttattttcttttggaatatac 587
|||| |||| |||| |||||||||| |||||||||| ||||||||||||||| | |||||
Sbjct: 8588 cataataagaatcctttcttctcttcaatccacttgtttttattttcttttgtattatac 8529
Query: 588 ttttccttttttctttttcgaatat-cacgggatatgattcgaagtcaacttcgggttct 646
||||||| |||||| ||||| |||| ||||| ||||||||||||||||||| | || ||
Sbjct: 8528 ttttcctcttttctctttcgtatatacacggtatatgattcgaagtcaactac-ggatca 8470
Query: 647 ttagaagcttaacggggaccgatgtctacttcattttgagcagtgccaaaatccgggggg 706
|||||||| |||| | || ||||||||||| ||| | |||||||||||||||||| ||
Sbjct: 8469 ttagaagcataac-gagaacgatgtctactccatctgaagcagtgccaaaatccggtggt 8411
Query: 707 aaaattggcagttaaccttgagaacccctaggggtcccaaggacttgggctgaaa 761
||| | |||||| ||||||| ||||||| |||| |||||||| ||||||||||
Sbjct: 8410 aaa--ttgcagtttaccttgaagacccctaagggtaccaaggac-tgggctgaaa 8359
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8916
Number of Sequences: 1807
Number of extensions: 8916
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)