BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1275 0.0
>3x_Contig1570
Length = 12233
Score = 1275 bits (643), Expect = 0.0
Identities = 686/695 (98%), Gaps = 4/695 (0%)
Strand = Plus / Minus
Query: 86 cttcatcgccttcttcctcttcctcttcttcttcttcttcaccctcatcttcttcgtcta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4486 cttcatcgccttcttcctcttcctcttcttcttcttcttcaccctcatcttcttcgtcta 4427
Query: 146 tgttcaagaactccaacttttcattgatccgggataaagatggactctcgttgtattcgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4426 tgttcaagaactccaacttttcattgatccgggataaagatggactctcgttgtattcgc 4367
Query: 206 tatcgtcatcctgatcttgatcctggtcagactgctgctgttgcttcttccttaaatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 tatcgtcatcctgatcttgatcctggtcagactgctgctgttgcttcttccttaaatatg 4307
Query: 266 aatccttaagcacgctagctggtgtgttatgaggcgttggtgcattatcgatcttactcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4306 aatccttaagcacgctagctggtgtgttatgaggcgttggtgcattatcgatcttactcg 4247
Query: 326 acctcgatgtcttgatagggttggacatttttatgatgtgatccttactattttgccaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4246 acctcgatgtcttgatagggttggacatttttatgatgtgatccttactattttgccaaa 4187
Query: 386 tacactcaaatgtatacagctaatgtagttcaaatatcctgctgcaacactccaagtatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4186 tacactcaaatgtatacagctaatgtagttcaaatatcctgctgcaacactccaagtatc 4127
Query: 446 acaaatagcccactacctctacgatcagatgttccaagctgttacgtttcctactgaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4126 acaaatagcccactacctctacgatcagatgttccaagctgttacgtttcctactgaaag 4067
Query: 506 aaaattttctggctaaaaaatgctcttcttatatattccttacatattaaaatagatcac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4066 aaaattttctggctaaaaaatgctcttcttatatattccttacatattaaaatagatcac 4007
Query: 566 ggaagcatgcaaatactgcaaccgtatgccaattcaaaggactaaatcgtaccaattcct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4006 ggaagcatgcaaatactgcaaccgtatgccaattcaaaggactaaatcgtaccaattcct 3947
Query: 626 gggtaaaaaactcgggataaagcactcctgatatcaacggtacattatataatgaatctt 685
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946 ggtaaaaaaactcggaataaagcactcctgatatcaacggtacattatataatgaatctt 3887
Query: 686 gagctgtaaaatactctgaagtaatcctgatcccctcttcttttctttcaatagtcgctt 745
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 3886 gagctgtaaaatactctgaagtaatcctgatcccctcttc-tttctctcaatagtcgc-t 3829
Query: 746 ttttttggatatcagaaatttcaagttttataaag 780
|| |||||||||||| |||||| ||||||||||||
Sbjct: 3828 ttctttggatatcag-aatttc-agttttataaag 3796
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9212
Number of Sequences: 1807
Number of extensions: 9212
Number of successful extensions: 501
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)