BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB05RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1203 0.0
>3x_Contig1335
Length = 8696
Score = 1203 bits (607), Expect = 0.0
Identities = 715/738 (96%), Gaps = 10/738 (1%)
Strand = Plus / Minus
Query: 49 tgcttcataccactggaaaacttcaaatctttggtacttccctatgccatcaactttggt 108
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8570 tgcttcatac-actggaaaacttcaaatctttggtacttccctatgccatcaactttggt 8512
Query: 109 ttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511 ttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccat 8452
Query: 169 gttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8451 gttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagc 8392
Query: 229 gtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8391 gtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaac 8332
Query: 289 cctgtaaagtatctattggagttattggggattatgttgataatacggtacttcacagtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8331 cctgtaaagtatctattggagttattggggattatgttgataatacggtacttcacagtg 8272
Query: 349 gtacatccattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8271 gtacatccattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactg 8212
Query: 409 atcggaagaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8211 atcggaagaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcg 8152
Query: 469 tatgtctaccttgaagtaatgagacctagcacgatgatattccaccctatattgcctatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8151 tatgtctaccttgaagtaatgagacctagcacgatgatattccaccctatattgcctatt 8092
Query: 529 gaaattaaaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8091 gaaattaaaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttg 8032
Query: 589 attatgtgcacatttatgacngttgttcccttctcccttgtttgaacctcgatactacat 648
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct: 8031 attatgtgcacatttatgacggtggtt-ccttctcccttgtttgaacctcgatactacat 7973
Query: 649 cttgccatttatatttttggaggctttttattacaatggcacctggaacatttctggggt 708
||||||||||||| |||||||||||||| || |||||||||||| |||| ||||||||
Sbjct: 7972 cttgccatttata-ttttggaggcttttcatcacaatggcacct-gaaccattctgggg- 7916
Query: 709 taatcaaatanggtaaggggaactggaaccaaaaagacctttgtcttgaatgtgcctggg 768
||||| |||| ||||||| | ||||||| | ||||||| ||||| ||||||||| | ||
Sbjct: 7915 taatccaata-ggtaaggtg-actggaa-cgaaaagacacttgtc-tgaatgtgcat-gg 7861
Query: 769 ttaatgataattaatttg 786
|| |||||||||||||||
Sbjct: 7860 tttatgataattaatttg 7843
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7680
Number of Sequences: 1807
Number of extensions: 7680
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)