BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB06FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1241 0.0
>3x_Contig1741
Length = 21706
Score = 1241 bits (626), Expect = 0.0
Identities = 695/710 (97%), Gaps = 6/710 (0%)
Strand = Plus / Minus
Query: 87 cactgaataccaaagattagcagctttctgggaaagtttggtttcgtacctgataagtgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18994 cactgaataccaaagattagcagctttctgggaaagtttggtttcgtacctgataagtgc 18935
Query: 147 tgattctttattcagtaattcattagaatatttgaaataaataaacgattgcttgtttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18934 tgattctttattcagtaattcattagaatatttgaaataaataaacgattgcttgtttgt 18875
Query: 207 gatcggtatcactaataacttcacgggatcgttaacgtactgttgtatagttgaactctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18874 gatcggtatcactaataacttcacgggatcgttaacgtactgttgtatagttgaactctt 18815
Query: 267 gttataagcctttgaatatgctgaaaatgaacgaattttaatcatcaattaattatgcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18814 gttataagcctttgaatatgctgaaaatgaacgaattttaatcatcaattaattatgcag 18755
Query: 327 gttgagaacgggagggagctgttgccagattttcgtttgtggagctgtccgaggtctccc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18754 gttgagaacgggagggagctgttgccagattttcgtttgtggagctgtccgaggtctccc 18695
Query: 387 gtgtcacagctgtcagatgttttacagaaataaaagattagttgtttatcggtgctactg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18694 gtgtcacagctgtcagatgttttacagaaataaaagattagttgtttatcggtgctactg 18635
Query: 447 ttccatccataagtttaaagttccggacctttaaaattactacgttaaataataaaagtc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18634 ttccatccataagtttaaagttccggacctttaaaattactacgttaaataataaaagtc 18575
Query: 507 gaatccttactatgttgaaattgctatgaaccatgaatgaatatgcaaaaaagaagaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18574 gaatccttactatgttgaaattgctatgaaccatgaatgaatatgcaaaaaagaagaaac 18515
Query: 567 tataaatttggatgatatttatagcgaactaacacatatcgggtcaattgaaaggtatcg 626
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18514 tataaatttggatgatattataagcgaactaacacatatcgggtcaattgaaaggtatcg 18455
Query: 627 acatgatcaagatgcaaccaatcgagtcgctagacgctgttataagcgcagcgaaagat- 685
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18454 acatgatcaagatgcaaccaatcgagtcgctagacgctgtaataagcgcagcgaaagata 18395
Query: 686 ttttattgtatgcgag-tcatttagaacgttttggaatagtttttagtatattttttttt 744
|||||||| ||||||| ||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 18394 ttttattgaatgcgagttcatttagaacgttttgtaatagtttttagtata-ttcttttt 18336
Query: 745 cggcattccaaatccttgtgtttttttgggacaaaatttgctgtcaattg 794
|||||| |||||||| |||| ||||||||||| ||| |||||||||||||
Sbjct: 18335 cggcatcccaaatcc-tgtg-ttttttgggacgaaa-ttgctgtcaattg 18289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9234
Number of Sequences: 1807
Number of extensions: 9234
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)