BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB06RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1308 0.0
>3x_Contig1741
Length = 21706
Score = 1308 bits (660), Expect = 0.0
Identities = 699/708 (98%), Gaps = 3/708 (0%)
Strand = Plus / Plus
Query: 43 gctttgagttgggaaacgtatttaagccactcattcttgtctcgttgattactcaattcg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17232 gctttgagttgggaaacgtatttaagccactcattcttgtctcgttgattactcaattcg 17291
Query: 103 tagctttcaggaatcggagcgttgaagatagcatccaatcgtttcccaccttcccaatct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292 tagctttcaggaatcggagcgttgaagatagcatccaatcgtttcccaccttcccaatct 17351
Query: 163 ccatctaaattttgaaagatttcttgtctgactctttctacttcctcatcataactgcta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17352 ccatctaaattttgaaagatttcttgtctgactctttctacttcctcatcataactgcta 17411
Query: 223 tctgtcgtgtgtccatagtagtatgcagttccatcttcggtatccactgcatgcgtatct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17412 tctgtcgtgtgtccatagtagtatgcagttccatcttcggtatccactgcatgcgtatct 17471
Query: 283 gtatgtttattagtttcctcatcgacaactattccatgccccttgatttccttttcgtca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17472 gtatgtttattagtttcctcatcgacaactattccatgccccttgatttccttttcgtca 17531
Query: 343 acattcttacctaaggaagacgacgaattactgactattgtagattgtcctctggtgcca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17532 acattcttacctaaggaagacgacgaattactgactattgtagattgtcctctggtgcca 17591
Query: 403 gcaccacttgattctgtcttgggtttgtcaagaataattcttgaagtgtatgaaggattg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17592 gcaccacttgattctgtcttgggtttgtcaagaataattcttgaagtgtatgaaggattg 17651
Query: 463 ctaccggcattttgaagaaattcactccatttatctgaatgcgacattaagaacgtatcc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17652 ctaccggcattttgaagaaattcactccatttatctgaatgcgacattaagaacgtatcc 17711
Query: 523 ttgaacatctgatcgcattcacttcgtttaggatactgttttgagccactattagcacat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17712 ttgaacatctgatcgcattcacttcgtttaggatactgttttgagccactattagcacat 17771
Query: 583 gtatccactgcgaagggagggacagtacggggatacaacgaatatgcattccagatctca 642
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17772 gtatccactgcgaagggagggacagtacggggatacaacgaatatgcattcaagatctca 17831
Query: 643 ggatactgcttcgaatcagcatttgattcatcagtcgacagcgaatcctttaaatttctt 702
||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct: 17832 ggatactgcttcgaatcagcatttgatacatcagtcgacagcgaatcc-ttagaattctt 17890
Query: 703 ggtagaaacttcttgagattttccccattactttcttttggcacagct 750
||||||||| |||||||||||| ||||||||| ||||| |||||||||
Sbjct: 17891 ggtagaaac-tcttgagatttt-cccattactctctttcggcacagct 17936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6981
Number of Sequences: 1807
Number of extensions: 6981
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)