BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB07FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1189 1179 0.0
>3x_Contig1189
Length = 5010
Score = 1179 bits (595), Expect = 0.0
Identities = 676/697 (96%), Gaps = 5/697 (0%)
Strand = Plus / Minus
Query: 87 atctgcatttccccagggaaaacagtcggtatggaattagaaatgaaatccgaatggaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4160 atctgcatttccccagggaaaacagtcggtatggaattagaaatgaaatccgaatggaaa 4101
Query: 147 gaaaaaagagattgggtatcaaatggcagggcttataacagacctcctgcaaattaccac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4100 gaaaaaagagattgggtatcaaatggcagggcttataacagacctcctgcaaattaccac 4041
Query: 207 ccttgtattcctatttcgattcgaaaagctaggtttgcttcaagtttcgcgtttttaggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4040 ccttgtattcctatttcgattcgaaaagctaggtttgcttcaagtttcgcgtttttaggt 3981
Query: 267 cttttttttttcaagtcattttccttcctagtatggtgaacattcttttcaattagtata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3980 cttttttttttcaagtcattttccttcctagtatggtgaacattcttttcaattagtata 3921
Query: 327 actgttacagtaaatgattttagaaagaataatttaccagaagtggaagaaatattagct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3920 actgttacagtaaatgattttagaaagaataatttaccagaagtggaagaaatattagct 3861
Query: 387 gtcttgttaatagttttctgccacactcgttttgaatttggtaggttttttcttccattg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860 gtcttgttaatagttttctgccacactcgttttgaatttggtaggttttttcttccattg 3801
Query: 447 ttatttggcatacatatataccaagacgtgaagtttaattgtgtttttctttggtgaaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 ttatttggcatacatatataccaagacgtgaagtttaattgtgtttttctttggtgaaaa 3741
Query: 507 ttgtacctgagggaaatactgagaaattgagacaaggctcatcacatanaactggaagta 566
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3740 ttgtacctgagggaaatactgagaaattgagacaaggctcatcacataaaactggaagta 3681
Query: 567 gattaaaccatanaagttatcgtgaaaaaaataatttcaattcacttcaaccatctttaa 626
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3680 gattaaaccataaaagttatcgtgaaaaaaataatttcaattcacttcaaccatcttcaa 3621
Query: 627 ccacgaccaattgaattcactagacggtaccaggatatcagacatagagaggtattttat 686
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 3620 ccacgaccaattgaattcactagacggtacca-gatatcagacatagagagtta-tttat 3563
Query: 687 ctaggcaagcgaattttcattctgataaaaccgattatttacaccactttcatttttata 746
||||||||||||| | ||| |||||||||| |||| ||||||||| |||||| | ||
Sbjct: 3562 ctaggcaagcgaa-tctcactctgataaaaacgatatattacaccacattcattctcat- 3505
Query: 747 aagaaattattatttcaaacttttacgcgaatgggga 783
|||||||||| | ||||||| ||||||||| ||||||
Sbjct: 3504 aagaaattatca-ttcaaacctttacgcgactgggga 3469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9584
Number of Sequences: 1807
Number of extensions: 9584
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)