BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZB07RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1281                                                        1449   0.0  

>3x_Contig1281 
          Length = 7825

 Score = 1449 bits (731), Expect = 0.0
 Identities = 809/830 (97%), Gaps = 4/830 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 1407

                                                                        
Query: 109  ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 1347

                                                                        
Query: 169  gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 1287

                                                                        
Query: 229  ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 1227

                                                                        
Query: 289  aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 1167

                                                                        
Query: 349  aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 1107

                                                                        
Query: 409  tgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaatca 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 tgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaatca 1047

                                                                        
Query: 469  acaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatagaa 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 acaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatagaa 987

                                                                        
Query: 529  ttaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatagtg 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  ttaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatagtg 927

                                                                        
Query: 589  atggttntattccatttttttcttgagtctaactcttgtaatgccgcatcatcacgcatg 648
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  atggttttattccatttttttcttgagtctaactcttgtaatgccgcatcatcacgcatg 867

                                                                        
Query: 649  ttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacatttaa 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 866  ttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacaataaa 807

                                                                        
Query: 709  ccgccaattct-gaatgacgagaagaagtattcttatttacattaagctctttttcatgt 767
            ||||||| ||| |||||||||||||||||||||||  ||||||||||||  |||||||||
Sbjct: 806  ccgccaaatctagaatgacgagaagaagtattctttattacattaagcttcttttcatgt 747

                                                                        
Query: 768  tcctttgcaagtatttctgaaaagtgtttacctgacgttgtaatgttggagtctggtaat 827
            ||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct: 746  tcctttgcaagtaattctgaaaggtgtttacctgacgttgtcatgttggagtct-gtaat 688

                                                              
Query: 828  cttgggacccgtaccc-atttataaaaattttttttggtttttgaacaat 876
            || | || |||||||| |||||| || ||||| | |||||||||||||||
Sbjct: 687  ctcgtgatccgtacccaatttat-aagattttctctggtttttgaacaat 639


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7936
Number of Sequences: 1807
Number of extensions: 7936
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)