BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1209 0.0
>3x_Contig1789
Length = 30977
Score = 1209 bits (610), Expect = 0.0
Identities = 619/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 48 ataataaaataatttaaatgagtgaattgaatgaatttattgtatattgtataataacga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9977 ataataaaataatttaaatgagtgaattgaatgaatttattgtatattgtataataacga 9918
Query: 108 gcgacaacaatatatttgaatgcaataataatgaaaaaagatgttaacccataaacgttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9917 gcgacaacaatatatttgaatgcaataataatgaaaaaagatgttaacccataaacgttt 9858
Query: 168 cggtggcttaatgttgtagtttttttttaaaagttgtggcttaattgttacggatctttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9857 cggtggcttaatgttgtagtttttttttaaaagttgtggcttaattgttacggatctttc 9798
Query: 228 atgaatcggcctatttcctctcactatgaccctttttttgacctggtatgtaagtgaaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9797 atgaatcggcctatttcctctcactatgaccctttttttgacctggtatgtaagtgaaga 9738
Query: 288 gagtgtaatcacaatctttgattgaatgtaaagattgattctacaccgaaagatcccaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9737 gagtgtaatcacaatctttgattgaatgtaaagattgattctacaccgaaagatcccaca 9678
Query: 348 attaataccttggtattctatttttttttcctttttagtgcagtttaaaaatgcttaata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9677 attaataccttggtattctatttttttttcctttttagtgcagtttaaaaatgcttaata 9618
Query: 408 aaacaacctgttaccattcagaatgacattcataagtcgtgacctatttcccctgtgtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9617 aaacaacctgttaccattcagaatgacattcataagtcgtgacctatttcccctgtgtat 9558
Query: 468 aaaataaattttgtatttccatagaatcgactatccatcagataaagacaaaaaaaatga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9557 aaaataaattttgtatttccatagaatcgactatccatcagataaagacaaaaaaaatga 9498
Query: 528 aaaatctaaaggaaaagtaagattgatggtagaatcaaaaacttgtaacaaatatttcat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9497 aaaatctaaaggaaaagtaagattgatggtagaatcaaaaacttgtaacaaatatttcat 9438
Query: 588 catgaattcggaaatgttttaaacaatttgatgactgcatgcatccttctcgcttctttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9437 catgaattcggaaatgttttaaacaatttgatgactgcatgcatccttctcgcttctttc 9378
Query: 648 ttctg-nggtatttttttttt 667
||||| ||||||||||||||
Sbjct: 9377 ttctgatggtatttttttttt 9357
Score = 109 bits (55), Expect = 1e-23
Identities = 127/147 (86%), Gaps = 3/147 (2%)
Strand = Plus / Minus
Query: 719 aggttcctctcctttaattga-atatgtggaattgtcaccaaacattggaaagctgacat 777
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 9305 aggttcctctcctttaattgacatatgtggaattgaaaccaaacattggaaagctgacat 9246
Query: 778 ttcttgtatgctgcatttatttggaagaggagcgttggggcattccgtttgggaggggta 837
|||| ||||||||||| | ||| |||||| |||||||| |||||| |||||||||
Sbjct: 9245 ttctgttatgctgcattatctaaaaagcggagcg-tggggcatcccgttt-ggaggggta 9188
Query: 838 tttcattgggaattcgacatttgaacc 864
|| |||| |||| ||||||| |||||
Sbjct: 9187 ttcgattgtgaatccgacattggaacc 9161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,653
Number of Sequences: 1807
Number of extensions: 15653
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)