BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZB10FM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig875                                                         1148   0.0  

>3x_Contig875 
          Length = 2795

 Score = 1148 bits (579), Expect = 0.0
 Identities = 631/642 (98%), Gaps = 5/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 112 agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 60

                                                                       
Query: 172 ttttgttagcttcttagcggtaggaagctgcactgacaatgacattttaccgagagctct 231
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61  ttttgttagcttcttagcggtaggaagctgcactgacaatgacatcttaccgagagctct 120

                                                                       
Query: 232 tgtgcgacccggaaaaaccttagagataataaaggacagttcagtacttttagagacgct 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgcgacccggaaaaaccttagagataataaaggacagttcagtacttttagagacgct 180

                                                                       
Query: 292 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 240

                                                                       
Query: 352 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 300

                                                                       
Query: 412 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 360

                                                                       
Query: 472 aattangtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 531
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattaggtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 420

                                                                       
Query: 532 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcatttt-aaa 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcattttcaaa 480

                                                                       
Query: 591 aaatatataccattctaagaagacaggcgtgtttaccgtttg-aaataaacggccttgtt 649
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 481 aaatatataccattctaagaagacaggcgtgtttaccgtttgaaaataaacggccttgtt 540

                                                                       
Query: 650 ttccaagatgcaccctgatagaatgtcggaa-aagactcgttcat-aatgtatggattga 707
           ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | 
Sbjct: 541 ttccaagatgcaccctgatagaatg-cggaataagactcgttcataaatgtatggatagt 599

                                                     
Query: 708 aaatcgttagatgagaaaagtttgttacatgtaagacatttt 749
           |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 600 aaatcgttagatgagaaaggtttgttacatgtaggacatttt 641


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8141
Number of Sequences: 1807
Number of extensions: 8141
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)