BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig910 779 0.0
3x_Contig1039 159 1e-38
>3x_Contig910
Length = 3140
Score = 779 bits (393), Expect = 0.0
Identities = 487/512 (95%), Gaps = 5/512 (0%)
Strand = Plus / Minus
Query: 269 aatggcaaggattcacgcaacttgtgtggaccagcagatggtcttggtgcgtaacaaccg 328
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3140 aatggcaaggat-cacgcaacttgtgtggttt-gcagatggtcttggtgcgtaacaaccg 3083
Query: 329 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatgcttctttctg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatgcttctttctg 3023
Query: 389 ttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatagg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 ttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatagg 2963
Query: 449 tgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaggttat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 tgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaggttat 2903
Query: 509 gatgatgttatcttaatcactttaatattcgttactgtaagtctgctatctaacatcaat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 gatgatgttatcttaatcactttaatattcgttactgtaagtctgctatctaacatcaat 2843
Query: 569 tccagaattcattctcccataaacatactagaaattgacacgttagtccagttcaacana 628
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2842 tccagaattcaatctcccataaacatactagaaattgacacgttagtccagttcaacaaa 2783
Query: 629 ctgcctctta-aatccggtcaacttcaagtagtaatctgttcttatttggatgtcatgtt 687
|||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2782 ctgcctcttataatccgttcaacttcaggtagtaatctgttcttatttggatgtcatgta 2723
Query: 688 attacttaaggtccttttaatgccaccggtatatttggaccccactttcaattgccattt 747
||||||| |||| ||| ||||| |||||||||| || || | ||| ||| ||||||||||
Sbjct: 2722 attactt-aggttcttctaatgtcaccggtataatttgaacacacattcgattgccattt 2664
Query: 748 cccaatttcttttgcttgggctgggttttccc 779
||||| ||||||||||| |||| ||||||||
Sbjct: 2663 -ccaatatcttttgcttgagctgtgttttccc 2633
>3x_Contig1039
Length = 4866
Score = 159 bits (80), Expect = 1e-38
Identities = 94/96 (97%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 44 gcttcttcatcagtgatacggtggacagcgaatctacccttaacatcgtagacc-aatct 102
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 95 gcttcttcatcagtgatacggtggacagcgaatctaccct-aacatcgtagacccaatct 37
Query: 103 gaagttttcgttggtagcttccaaggtgataacatc 138
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gaagttttcgttggtagcttccaaggtgataacatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6816
Number of Sequences: 1807
Number of extensions: 6816
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)