BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB11FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1047 0.0
>3x_Contig1600
Length = 9359
Score = 1047 bits (528), Expect = 0.0
Identities = 560/568 (98%), Gaps = 2/568 (0%)
Strand = Plus / Minus
Query: 88 agcgttattgaacatggtctccaagtccgactttacttcgttgatagattggtattgttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 agcgttattgaacatggtctccaagtccgactttacttcgttgatagattggtattgttt 2633
Query: 148 cttgttcaacttctttgttatcgtctctaatgctactggcttctcaataaccttgtagta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 cttgttcaacttctttgttatcgtctctaatgctactggcttctcaataaccttgtagta 2573
Query: 208 gtccggatccttcttccttgaaggtaatctttcgaaaatgaaagttcttgaatgctcatc 267
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2572 gtccggatactccttccttgaaggtaatctttcgaaaatgaaagttcttgaatgctcatc 2513
Query: 268 cgttggatcagttaactctcttagtaaagccaatagtgcctcgactttatcttttaaagg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 cgttggatcagttaactctcttagtaaagccaatagtgcctcgactttatcttttaaagg 2453
Query: 328 tggttcttctttgcgtttggtgggagcgtcatcttttttcatgttaagcttgagtttgat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tggttcttctttgcgtttggtgggagcgtcatcttttttcatgttaagcttgagtttgat 2393
Query: 388 cttcttttttaaaggtcctgcatcttgttttaccggtttcgcttctttctcttcacccaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 cttcttttttaaaggtcctgcatcttgttttaccggtttcgcttctttctcttcacccaa 2333
Query: 448 ttccgactcctcttcaggagtagtcgaaggagtagcgacaacctttcttctagaacgagt 507
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2332 ttccgactcctcttcaggagtagtcgaaggagtagcgacaacctttctcctagaacgagt 2273
Query: 508 tctaccattttcacgagcaggagttacggcttgctcagcagatattacagtattggatgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tctaccattttcacgagcaggagttacggcttgctcagcagatattacagtattggatgt 2213
Query: 568 tgaggaagattcttcaggctcaacgctattttttttgcctttccaatcctaattgttttc 627
|||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 2212 tgaggaagattcttcaggctcaacgcta-ttttctagactttccaatcctaattgttttc 2154
Query: 628 ttttgacgtttttcacgagcagctcttt 655
|||||||||||||||||||||||||||
Sbjct: 2153 -tttgacgtttttcacgagcagctcttt 2127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8961
Number of Sequences: 1807
Number of extensions: 8961
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)