BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB11RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1291 1273 0.0
>3x_Contig1291
Length = 6514
Score = 1273 bits (642), Expect = 0.0
Identities = 702/717 (97%), Gaps = 4/717 (0%)
Strand = Plus / Minus
Query: 42 gctttccatcttttatcgatctagccttgaaaaaacc-caacaaaagtacaatgagaacg 100
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4921 gctttccatcttttatcgatctagccttgaaaaaaccacaacaaaagtacaatgagaacg 4862
Query: 101 gctgaaaaagaagtataaattgagtaaagtccattagtaacctctcttgacaaacccagc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4861 gctgaaaaagaagtataaattgagtaaagtccattagtaacctctcttgacaaacccagc 4802
Query: 161 ttgtatcattgatcttaaaggtaggttacggcaaagcggttgttattttgaatattcaaa 220
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 4801 ttgtatcattgatcttaaaggtaggttacggcaaagcggttgttattttgaagaagcaaa 4742
Query: 221 ctaaccctgcattatttctacctacgtggagaaaaaagtacacatacgagttagctcatt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4741 ctaaccctgcattatttctacctacgtggagaaaaaagtacacatacgagttagctcatt 4682
Query: 281 gaatttgaatatgagtgaaacaagacctaagacatttttcgatatttcgattgggggcaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4681 gaatttgaatatgagtgaaacaagacctaagacatttttcgatatttcgattgggggcaa 4622
Query: 341 acctgctggtcggattgttttcgagttgtattctgatgttgttccaaagacggcggagaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4621 acctgctggtcggattgttttcgagttgtattctgatgttgttccaaagacggcggagaa 4562
Query: 401 tttcttaaaactctgtgaaggtaactcgggatttgccaaatccaaaccggatataccatt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561 tttcttaaaactctgtgaaggtaactcgggatttgccaaatccaaaccggatataccatt 4502
Query: 461 gagctacaagggctcgatcttccacagagttatcaagtctttcatgtgtcaatttggaga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4501 gagctacaagggctcgatcttccacagagttatcaagtctttcatgtgtcaatttggaga 4442
Query: 521 tttcactaacttcaacggcactggtggtgaatcgatttacggagagaaatttgaagatga 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4441 tttcactaacttcaacggcactggtggtgaatcgatttacggagagaaatttgaagatga 4382
Query: 581 gatttttactttgaagcatgataagccattcttgttgtctatggcanacgctggtgcgaa 640
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4381 gaattttactttgaagcatgataagccattcttgttgtctatggcaaacgctggtgcgaa 4322
Query: 641 ta-caatggatcttaatgtttcataacatgcgttccaacttcacacttagatggtaagca 699
|| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4321 taccaatggatctcaatgtttcataacatgcgttccaactccacacttagatggtaagca 4262
Query: 700 tggtttttttcggtgaagtgat-cagggcaaaaggttagtccgacctttagaaaata 755
| ||| |||||||||||||||| |||||||||||||||||| || || |||||||||
Sbjct: 4261 t-gttgttttcggtgaagtgatccagggcaaaaggttagtcagaactatagaaaata 4206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7080
Number of Sequences: 1807
Number of extensions: 7080
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)