BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZB12FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1686                                                        1318   0.0  

>3x_Contig1686 
          Length = 15382

 Score = 1318 bits (665), Expect = 0.0
 Identities = 713/724 (98%), Gaps = 4/724 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   gaagctaataactctttaaaatcaacttacagattgtacgagaacagtagccctggaaca 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 gaagctaataactctttaaaatcaacttacagattgtacgagaacagtagccctggaaca 1163

                                                                        
Query: 146  gattgttgtcttgcagctaacatctgtgtcagtagtaaggcaaatactattaattcattc 205
            |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 1162 gattgttgtcttgcagctaacaacggggtcagtagtaaggcaaatactattaattcattc 1103

                                                                        
Query: 206  atggtcattaa-ctgggttgcattgctatccgtacatatttagcgtttttccgaatacta 264
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 atggtcatgaagctgggttgcattgctatccgtacatatttagcgtttttccgaatacta 1043

                                                                        
Query: 265  tcgtaagtagtctctgttgaggaagccttgatttttatgtcaaggctcgaagatgttaaa 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 tcgtaagtagtctctgttgaggaagccttgatttttatgtcaaggctcgaagatgttaaa 983

                                                                        
Query: 325  aacctggttcagtcacaaagagggtaagattaaagacgaacatacaaaccattagccatt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  aacctggttcagtcacaaagagggtaagattaaagacgaacatacaaaccattagccatt 923

                                                                        
Query: 385  ggccagcattgatctattagtactatttactattatgtacaagggtgatattttgttagt 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  ggccagcattgatctattagtactatttactattatgtacaagggtgatattttgttagt 863

                                                                        
Query: 445  taacatttatttacttttgactttgtttgctagattcttctgaagtttgttttgattgta 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  taacatttatttacttttgactttgtttgctagattcttctgaagtttgttttgattgta 803

                                                                        
Query: 505  ggtcttcctctcacgtcccgtatgcattttttttttggttcagttccatggcagctttat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  ggtcttcctctcacgtcccgtatgcattttttttttggttcagttccatggcagctttat 743

                                                                        
Query: 565  cattttcaggaattatacgggcaccaatagatgttgcatatatgcgtcctattttctttg 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  cattttcaggaattatacgggcaccaatagatgttgcatatatgcgtcctattttctttg 683

                                                                        
Query: 625  cagcttcaatgaggtcattggtgtacgaatcttctgcaggattctgntaatagatgtcat 684
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 682  cagcttcaatgaggtcattggtgtacgaatcttctgcaggattctgtaaatagatgtcat 623

                                                                        
Query: 685  cgaaattctcttcctccagttgattctttcgttcgcactcttcataatatctttctgctg 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  cgaaattctcttcctccagttgattctttcgttcgcactcttcataatatctttctgctg 563

                                                                        
Query: 745  gttcaggtatatcccagttcaggtcttttagctttcttcaatcattcttgaattgacgga 804
            ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||
Sbjct: 562  gttcaggtatatcccagttca-gtcttttagc-ttcttcaatca-tcttgaaatgacgga 506

                
Query: 805  gtgg 808
            ||||
Sbjct: 505  gtgg 502


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8270
Number of Sequences: 1807
Number of extensions: 8270
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)