BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZB12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 1312 0.0
>3x_Contig1258
Length = 6899
Score = 1312 bits (662), Expect = 0.0
Identities = 785/816 (96%), Gaps = 8/816 (0%)
Strand = Plus / Minus
Query: 49 ttttggtacaaatatagagcgcccagtgaagcagaaacaatgacagctgcgcttccgagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 ttttggtacaaatatagagcgcccagtgaagcagaaacaatgacagctgcgcttccgagt 3833
Query: 109 accattttcccaattttgtataaatgcatactagaaggaaaatgtcgctttggcaaaaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 accattttcccaattttgtataaatgcatactagaaggaaaatgtcgctttggcaaaaag 3773
Query: 169 aaatatgttacgacaaactatcaccttgatcaataaactttctattcgatggatatagtg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 aaatatgttacgacaaactatcaccttgatcaataaactttctattcgatggatatagtg 3713
Query: 229 acagcagctacgttaatgaggtgcttgtcataattaaactccctttaatttacataatac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3712 acagcagctacgttaatgaggtgcttgtcataattaaactccctttaatttacataatac 3653
Query: 289 cgatatcctgctaaaacaagccagctacggtttgtatttcaattcgcatgcttcgagagc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3652 cgatatcctgctaaaacaagccagctacggtttgtatttcaattcgcatgcttcgagagc 3593
Query: 349 atgaaaaactccagaaaactcaatattacccgtcctttgaatataatcacgtgtattgac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 atgaaaaactccagaaaactcaatattacccgtcctttgaatataatcacgtgtattgac 3533
Query: 409 aactgattcatgttttacccggacaagtcgtaacgtcattaccctctcttagaagaaaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 aactgattcatgttttacccggacaagtcgtaacgtcattaccctctcttagaagaaaga 3473
Query: 469 aaaaaaaaaatttgtagcagtgacagcatagtacaggcagcagctgcgaaggttntcaat 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3472 aaaaaaaaaatttgtagcagtgacagcatagtacaggcagcagctgcgaaggttttcaat 3413
Query: 529 tttgttaactatgggaagttggcaaatggaagaaaaaatgaagttggattaacgaatgtg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3412 tttgttaactatgggaagttggcaaatggaagaaaaaatgaagttggattaacgaatgtg 3353
Query: 589 atatcanagattggattgactctctgcgcatgttttaagatttttcgagtgttttttact 648
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3352 atatcaaagattggattgactctctgcgcatg-tttaagatttttcgagtgttttttact 3294
Query: 649 cgttaatgtatctgtataagacccaga-gttacctgatcaattttgaacctggaagacat 707
||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 3293 cgtaaatgtatctgtataaga-ccagaggttacctgatcaattttgaacctgaaagacat 3235
Query: 708 tcatctttccacccaaagagaatattatgtccgtttgaaaaagttacttcaaagacccag 767
||||| | ||| || ||||||| ||||||| ||||| |||||||| ||||||||||
Sbjct: 3234 cgatcttacgaccaaagaagaatatcatgtccg-ttgaagaagttactcaaaagacccag 3176
Query: 768 gatttaactgttggacaaaaccaagccagctacttgttttatttgaatcttaaggaattt 827
|||||||||| ||||| || ||||||||||||| |||||||| || ||| ||||||||||
Sbjct: 3175 gatttaactg-tggacgaagccaagccagctac-tgttttatctg-atcctaaggaattt 3119
Query: 828 taatttgaagcatccttttggttgcaaatggacttt 863
|| |||||||||||||| || |||||||||||||
Sbjct: 3118 caa-ttgaagcatcctttgagtagcaaatggacttt 3084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,887
Number of Sequences: 1807
Number of extensions: 12887
Number of successful extensions: 154
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)