BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZC01FM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig399 1009 0.0 >3x_Contig399 Length = 2300 Score = 1009 bits (509), Expect = 0.0 Identities = 565/576 (98%), Gaps = 6/576 (1%) Strand = Plus / Plus Query: 198 tgaacaagtagttgaacattatttaagacaaaaatgagaatatcttgtgtccggccaaca 257 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgaacaagtagttgaacatgacgtaagacaaaaatgagaatatcttgtgtccggccaaca 60 Query: 258 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 120 Query: 318 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 180 Query: 378 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 240 Query: 438 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgngaatggg 497 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 241 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgggaatggg 300 Query: 498 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 360 Query: 558 cttcaaggtcatatctggtcatagaatctagatcccaat-ccattcaccgttgggggtca 616 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 361 cttcaaggtcatatctggtcatagaatctagatcccaatcccattcaccgttgggggtca 420 Query: 617 gcttttctctatcccatttagagttgaattccac-acgattttttcct-accacacatcg 674 |||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||| Sbjct: 421 gcttttctctatcccatttagagttgaa-tccacaacgattatttcctaaccacacatcg 479 Query: 675 tagcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaag-acca 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 480 tagcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaagaacca 539 Query: 734 ctactttgtaaaagtccatgtaacatttaaaacagg 769 ||||||||||||||||||||||||| |||||||||| Sbjct: 540 ctactttgtaaaagtccatgtaaca-ttaaaacagg 574 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6511 Number of Sequences: 1807 Number of extensions: 6511 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)