BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC01RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1144 0.0
>3x_Contig1665
Length = 15710
Score = 1144 bits (577), Expect = 0.0
Identities = 632/644 (98%), Gaps = 5/644 (0%)
Strand = Plus / Minus
Query: 45 cttctctcaattcatgcgatgcctttctggttctagtcgaagctagttttttctgtcaaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 cttctctcaattcatgcgatgcctttctggttctagtcgaagctagttttttctgtcaaa 983
Query: 105 gacaaatactggaaattggttaaatgtaaagataaaaatacagaaatgttgaataggata 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gacaaatactggaaattggttaaatgtaaagataaaaatacagaaatgttgaataggata 923
Query: 165 gataggatgctattaggaacctacatttggttcttttgtagctagtaaagtacttattgc 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 922 gataggatgctattaggaacctacatttggttcttttgtagctagtaaagtacttaaagc 863
Query: 225 aggtttatgaggccattgaaatcataagtggcttacacagcttaattttagccatttgaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aggtttatgaggccattgaaatcataagtggcttacacagcttaattttagccatttgaa 803
Query: 285 acagacataacacccttacattacatattaattcgacatgtttttccaattacatgtcaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acagacataacacccttacattacatattaattcgacatgtttttccaattacatgtcaa 743
Query: 345 ccaccatgaaaaaaaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccaccatgaaaaaaaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaa 683
Query: 405 aacaatgaacaaagcagacagataaccttgataaaagccaagcaaatccagcatatatct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aacaatgaacaaagcagacagataaccttgataaaagccaagcaaatccagcatatatct 623
Query: 465 taatacgttgagcatcacaagcaaaattgcttgactttgngtttttgtctttcctctcct 524
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 taatacgttgagcatcacaagcaaaattgcttgactttgtgtttttgtctttcctctcct 563
Query: 525 ggaccaataaatatcgaataaaagatgtcatatcaccaaaccttcaattccttccattga 584
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 562 ggaccaataaatatcgaataaaagatgtcatatcacc-aaccttcaattccctccattga 504
Query: 585 tgcaaatagtaacacgaaacggttttaccagccatcacaacagttattcgttcccttcaa 644
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 503 tgcaaatagtaacacgaacgggttttaccagccatcacaacag-tattcgttccc-tcaa 446
Query: 645 ggatctatggctttttggaaatgggatgcaaggaatctggcatg 688
||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 445 ggatctatggc-ttttggaaatgggatgc-agggatctggcatg 404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9144
Number of Sequences: 1807
Number of extensions: 9144
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)