BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC02FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1326 0.0
>3x_Contig652
Length = 2532
Score = 1326 bits (669), Expect = 0.0
Identities = 738/756 (97%), Gaps = 4/756 (0%)
Strand = Plus / Minus
Query: 86 tgatagcgatttatctgttaggttctcaagaatcttactgaataactgatgttgaattac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgatagcgatttatctgttaggttctcaagaatcttactgaataactgatgttgaattac 1768
Query: 146 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 1708
Query: 206 ggtttccttgtctgtacataaattgatagtcttggttataacatcagaggttatgtattt 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 ggtttccttgtctggacataaattgatagtcttggttataacatcagaggttatgtattt 1648
Query: 266 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 1588
Query: 326 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 1528
Query: 386 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 1468
Query: 446 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 1408
Query: 506 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaacaa 1348
Query: 566 catctcattttgaatatccaaatagtaggtatctagatcatataatctcgaaacagctat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 catctcattttgaatatccaaatagtaggtatctagatcatataatctcgaaacagctat 1288
Query: 626 tccatgncattcaagattgtaagaataatcctgaatcaatttgagagttttccacaacgt 685
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1287 tccatgcaattcaagattgtaagaataatcctgaatcaattgaggagttttccacaacgt 1228
Query: 686 ttggaaacaaac-atgaaccttgcgtaattaactgcagaagcgttttcaatagtgaacgc 744
|||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1227 ttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaagagtgaacgc 1168
Query: 745 tttacaagcactttttaagaaaggcatttctgataccttcttcaagataggttgcgaatt 804
|| ||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1167 ttcacaggcactcttaaagaaaggcatttctgataccttcttcaagataggttgcg-att 1109
Query: 805 gatagtttttcgaccaatggctttcaaaaattcgaa 840
||||| |||||||||||| || ||||||||||||||
Sbjct: 1108 gatag-ttttcgaccaat-gcattcaaaaattcgaa 1075
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6883
Number of Sequences: 1807
Number of extensions: 6883
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)