BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 1407 0.0
>3x_Contig1479
Length = 7316
Score = 1407 bits (710), Expect = 0.0
Identities = 812/840 (96%), Gaps = 5/840 (0%)
Strand = Plus / Minus
Query: 46 cttggctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaaa 105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3929 cttggctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaa- 3871
Query: 106 tcaatcagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3870 tcaatcagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgc 3811
Query: 166 cattattatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacacct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3810 cattattatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacacct 3751
Query: 226 ttttattttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaggatcattttg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3750 ttttattttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaggatcattttg 3691
Query: 286 cacttctttgaaagatgttccaaccattgttttaggttttacctcatacattcaaacatg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3690 cacttctttgaaagatgttccaaccattgttttaggttttacctcatacattcaaacatg 3631
Query: 346 ttataaagttggaatataccatgaattcaatcgaatatatcacgaactatgagaaaatcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3630 ttataaagttggaatataccatgaattcaatcgaatatatcacgaactatgagaaaatcc 3571
Query: 406 aaacggtatgaaaacaaatttgatcttttatcagaatgctgatactcactatcagttaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 aaacggtatgaaaacaaatttgatcttttatcagaatgctgatactcactatcagttaat 3511
Query: 466 aatcctcttttttttccttttacctatttctgttcttatcgacagtcattttgtcctcat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 aatcctcttttttttccttttacctatttctgttcttatcgacagtcattttgtcctcat 3451
Query: 526 atttgccttgctgatatgcccaataggttttggctgcatgtaagttgacgttcataacag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 atttgccttgctgatatgcccaataggttttggctgcatgtaagttgacgttcataacag 3391
Query: 586 agcactggttaagataatgtagatccataanagacgttccatctgaatatgttaactata 645
||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 3390 agcactggtaaagataatgtagatccataaaagacgttccatctgaatatgtaaactata 3331
Query: 646 gtaaaattaaattaaactcttgtaagaattaagttttgaggtatgacctggccaccaacg 705
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 3330 gtaaaattaaattaaactcttgtaagatttaag-tttgaggtatgacctggccaccaacg 3272
Query: 706 tcgatctaaaatgtaagagcatatcccgagatacattgaaaaaactt-aaactttattna 764
||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
Sbjct: 3271 tcgatctaaaatgtaagagcatagcccgagatacattgaaaaagcttaaaactttataaa 3212
Query: 765 ccctatgtgcaaaactatgtttcagttttatga-aaacttatttgggatgacatatatat 823
| |||||||||||||||| |||| ||||||| ||||| ||| || ||||||||| |
Sbjct: 3211 cgctatgtgcaaaactatagttcaagtttatgagaaactcattcggcatgacatattatt 3152
Query: 824 gaaaaagccctaaccttttttttgagaaccttcataatccaagatttg-tttgccgcatc 882
||| ||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 3151 gaataagccctaaacttatttttgagaagcttcataatccaagatttgctttgccgcatc 3092
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,377
Number of Sequences: 1807
Number of extensions: 10377
Number of successful extensions: 535
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)