BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 819 0.0
>3x_Contig1671
Length = 12265
Score = 819 bits (413), Expect = 0.0
Identities = 546/581 (93%), Gaps = 7/581 (1%)
Strand = Plus / Plus
Query: 116 ctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcagatc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6462 ctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcagatc 6521
Query: 176 cactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgttttct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6522 cactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgttttct 6581
Query: 236 gtttcaattttttcatcttctcttgatgtaaggatattaatgctgagagcctcgactcat 295
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6582 gtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactcat 6641
Query: 296 attttttattgagcatgagatagaatcttgttatggcaangccttatgcatattagtaaa 355
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6642 attttttattgagcatgagatagaatcttgttatggcaa-gccttatgcatattagtaaa 6700
Query: 356 gctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacatat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6701 gctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacatat 6760
Query: 416 gcaattatgcaaaccaataacgtcaaataattataagttactgttgcacgtaaacttttg 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6761 gcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaacttttg 6820
Query: 476 gctctatcttggatt-cctttaatttcgtttcgtaatcatgtttcttattcgttttggaa 534
|||||||||| |||| |||| |||||||||||||| |||||| ||||||||||| |||||
Sbjct: 6821 gctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatggaa 6880
Query: 535 gataagtctttgttattcctttgaacttactttcttaacatcattttcgccactttcatt 594
|||||||||||||||| |||||||||| || |||||||||||||| ||||||||| || |
Sbjct: 6881 gataagtctttgttatacctttgaactaac-ttcttaacatcattatcgccacttacaat 6939
Query: 595 ctttcgtacgggggcttattatgttaaggtatccaatatcttttttccttttgatggccg 654
||||||||| || ||| | |||||||||||| ||||||| | |||| ||||||| |||
Sbjct: 6940 ctttcgtac-ggcgctcaacatgttaaggtat-caatatc-tacttccctttgatgtccg 6996
Query: 655 atcttctaaaaacccttttttttaggttgttcctttttttt 695
||| || | ||||||||| |||||||| || | ||||||||
Sbjct: 6997 atc-tcgagaaaccctttattttaggtagtccatttttttt 7036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,701
Number of Sequences: 1807
Number of extensions: 16701
Number of successful extensions: 1606
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)