BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC03RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1495 1172 0.0
>3x_Contig1495
Length = 10008
Score = 1172 bits (591), Expect = 0.0
Identities = 676/695 (97%), Gaps = 7/695 (1%)
Strand = Plus / Plus
Query: 48 ttcgaactcat-atcttcc-catttagttggacttctgtttcctcgtccttctggaattg 105
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067 ttcgaactcatcatcttccacatttagttggacttctgtttcctcgtccttctggaattg 5126
Query: 106 taacaccaagaatgggtaggatgtctgaccttgacggattggtggatcaatcgataaaac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5127 taacaccaagaatgggtaggatgtctgaccttgacggattggtggatcaatcgataaaac 5186
Query: 166 catcaagtaatggatgtcgtcagcttttggcaaagagaagattctgtttatttgacgatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 catcaagtaatggatgtcgtcagcttttggcaaagagaagattctgtttatttgacgatg 5246
Query: 226 ttgtaacttgtactcataagtcttacctctaagtctgatagagtttttgtagatatcaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 ttgtaacttgtactcataagtcttacctctaagtctgatagagtttttgtagatatcaat 5306
Query: 286 gtcgtaacggcctcttggcgtagtgaagaacagatcctggaaagaaatgatggcatcacc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 gtcgtaacggcctcttggcgtagtgaagaacagatcctggaaagaaatgatggcatcacc 5366
Query: 346 agaaatttcaccgatatctgccttagatctcaattcttcgtagaaatattctgctaaagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 agaaatttcaccgatatctgccttagatctcaattcttcgtagaaatattctgctaaagt 5426
Query: 406 cttctcttcttgaacgtctggttcttcactaccctcttccgtcttaacctccgacttaac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 cttctcttcttgaacgtctggttcttcactaccctcttccgtcttaacctccgacttaac 5486
Query: 466 accgtcttctgcttctgcttcgtcctttaccatgatttgatcttgatcttcattttcttc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 accgtcttctgcttctgcttcgtcctttaccatgatttgatcttgatcttcattttcttc 5546
Query: 526 aactgtgcctgggaacatat-acctcatttcaacaagttcatcacctgcaggattatatg 584
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 aactgtgcct-ggaacatataacctcatttcaacaagttcatcacctgcaggattatatg 5605
Query: 585 cctcatttttgggtgtcaaattctaatggcatctcattttttgctgttaaattagtgtta 644
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5606 cctca-ttttgggtgtcaaattctaatgcaatctcattttttgctgttaaattagtgtta 5664
Query: 645 ttgatgggcgtgtaaaggatttc-aaagttggcttaccggtccatg-aaaaaccattttc 702
|||||| |||||||| ||||||| ||||||||||||||| || ||| |||||||||||
Sbjct: 5665 ttgatgtgcgtgtaagggatttcaaaagttggcttaccgttcaatgaaaaaaccatttcg 5724
Query: 703 gttctagctaaatccaatttaccccattcccaacc 737
|||||||||| |||||||||||||| | ||||||
Sbjct: 5725 tttctagctaagtccaatttaccccaattccaacc 5759
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7870
Number of Sequences: 1807
Number of extensions: 7870
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)