BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1114 0.0
>3x_Contig1613
Length = 13977
Score = 1114 bits (562), Expect = 0.0
Identities = 632/649 (97%), Gaps = 5/649 (0%)
Strand = Plus / Minus
Query: 86 tcggtccagctggtactccagggtggcactatttgtttgccatgagatttttgttgggtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 tcggtccagctggtactccagggtggcactatttgtttgccatgagatttttgttgggtt 8221
Query: 146 ttggtatcggtcctaagagtgctacgacttccgtttacttggctgaatgttctaccaaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 ttggtatcggtcctaagagtgctacgacttccgtttacttggctgaatgttctaccaaaa 8161
Query: 206 agttacgtggtatcatctgtatgaactggcaaactttcactgctttcggtatcatgtggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 agttacgtggtatcatctgtatgaactggcaaactttcactgctttcggtatcatgtggg 8101
Query: 266 gttacgttttctctttgatcttttacagagttggaagagctggtattgccggtgggttga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8100 gttacgttttctctttgatcttttacagagttggaagagctggtattgccggtgggttga 8041
Query: 326 attggagattaatgttagccagtgctatgattcctgctattttagttntagtgcaaatcc 385
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8040 attggagattaatgttagccagtgctatgattcctgctattttagttttagtgcaaatcc 7981
Query: 386 cattctgtcctgaatctccccgttggttaatgggtaaaggtcgttacaaggaagcttatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7980 cattctgtcctgaatctccccgttggttaatgggtaaaggtcgttacaaggaagcttatg 7921
Query: 446 aatccaccctccagattagaaatcacaagatcctagcttgtcgtgatcttttctatcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7920 aatccaccctccagattagaaatcacaagatcctagcttgtcgtgatcttttctatcaac 7861
Query: 506 acgttttgttgatggaagaaaactctttggaaatgtcttactggactagattaaggg-aa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7860 acgttttgttgatggaagaaaactctttggaaatgtcttactggactagattaagggaaa 7801
Query: 565 tctttactgttagaag-aacaaaaacgccttgatttgtgccttcatttgtgccttcatgc 623
|||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7800 tcttcactgttagaagaaacagaaacgccttgatttgtgccttcatttgtgccttcatgc 7741
Query: 624 agcatttctgtgcaatt-atgttattgcgtactattcctctgccattttctttgcatca- 681
|||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 7740 agcaattctgtgcaattaatgttattgcgtactattcctctgccattttcttgcaatcag 7681
Query: 682 gtttcacttgaaatttcttctttgtgggctttcctaggtttcgggttaa 730
||||||| |||||||||||| ||||| |||| |||||| ||||| ||||
Sbjct: 7680 gtttcac-tgaaatttcttcattgtgtgcttccctaggcttcggtttaa 7633
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9124
Number of Sequences: 1807
Number of extensions: 9124
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)