BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZC05RM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1724                                                        1316   0.0  

>3x_Contig1724 
          Length = 20938

 Score = 1316 bits (664), Expect = 0.0
 Identities = 721/736 (97%), Gaps = 3/736 (0%)
 Strand = Plus / Minus

                                                                         
Query: 46    atatttgaccttcgaatcagaatgttgtaaaagttgcattattatcaatttgtctttacc 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17264 atatttgaccttcgaatcagaatgttgtaaaagttgcattattatcaatttgtctttacc 17205

                                                                         
Query: 106   aagtattttgatagaatcattatccaattccatgactttgcggatgtcattcaacaaaat 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17204 aagtattttgatagaatcattatccaattccatgactttgcggatgtcattcaacaaaat 17145

                                                                         
Query: 166   ttgaagactgaccgaagaaggcctcttctcggtgataaattccttcaataaatctatcaa 225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17144 ttgaagactgaccgaagaaggcctcttctcggtgataaattccttcaataaatctatcaa 17085

                                                                         
Query: 226   ttgcaagaatagtttccagttattttctttgaatttatccaaattgtccaaccagaattg 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17084 ttgcaagaatagtttccagttattttctttgaatttatccaaattgtccaaccagaattg 17025

                                                                         
Query: 286   atcgtcttgatgaacaggagaccataataaaatcttggagttcaactccgccaaatattc 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17024 atcgtcttgatgaacaggagaccataataaaatcttggagttcaactccgccaaatattc 16965

                                                                         
Query: 346   gtcgaatgatgttaattcatggtactctgcttccaaagattctttcaaagtagttaaatc 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16964 gtcgaatgatgttaattcatggtactctgcttccaaagattctttcaaagtagttaaatc 16905

                                                                         
Query: 406   ttgtttcaattcatcgtccaaaaactttctctccattatctggttcaaagtagggatggc 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16904 ttgtttcaattcatcgtccaaaaactttctctccattatctggttcaaagtagggatggc 16845

                                                                         
Query: 466   atttcctagcaaaattaaattcttaactgtggatttatgatttttcactgattcattgat 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16844 atttcctagcaaaattaaattcttaactgtggatttatgatttttcactgattcattgat 16785

                                                                         
Query: 526   accatttagaatgattgcaactgaaagtctgacgactttttccttaattgtagatctaat 585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16784 accatttagaatgattgcaactgaaagtctgacgactttttccttaattgtagatctaat 16725

                                                                         
Query: 586   caacctttatagttgtaaatagtgtgctagatgttccttagtgaacgcttcagttatctt 645
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16724 caaccttaatagttgtaaatagtgtgctagatgttccttagtgaacgcttcagttatctt 16665

                                                                         
Query: 646   agggatcgaaggtcaattacccgataatcattaacgcgtagtattgtagttgaattggaa 705
             | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |
Sbjct: 16664 a-ggatcgaaggtcaataaccagataatcattaacgcgtagtattgtagttgaatttgta 16606

                                                                         
Query: 706   aattgtttgaattcctttgttgaggttgatttttctttgat-gaaaagattgatttggaa 764
             ||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||| | ||
Sbjct: 16605 aattgtttgtattcgtttgttgaggttga-ttttcattgatagaaaagattgattggaaa 16547

                             
Query: 765   actttcggcaattaaa 780
             ||| ||||||| ||||
Sbjct: 16546 actatcggcaaataaa 16531


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,323
Number of Sequences: 1807
Number of extensions: 11323
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)