BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC06FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1074 0.0
>3x_Contig917
Length = 3433
Score = 1074 bits (542), Expect = 0.0
Identities = 602/614 (98%), Gaps = 6/614 (0%)
Strand = Plus / Minus
Query: 88 ggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtgatatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 ggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtgatatt 1842
Query: 148 ttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatgaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 ttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatgaa 1782
Query: 208 acacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacgg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 acacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacgg 1722
Query: 268 gttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagtacggg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 gttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagtacggg 1662
Query: 328 ataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataataac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataataac 1602
Query: 388 aagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcccagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 aagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcccagg 1542
Query: 448 atgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggccaatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 atgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggccaatt 1482
Query: 508 gacctgcgacaatgtcaatacagataaggagtgtttaccctttacgtgaagtctttcatg 567
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1481 gacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtctttcatg 1422
Query: 568 tgcctgttctttttacagtaatc-aaagactgagatgtcttgatttagattgcagtgaaa 626
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 1421 tgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagtg-aa 1363
Query: 627 gagcggatcgacataacgcattagaatgcatttggggagatcagtttgaagtttgcaatc 686
||||||||||||||| ||||||||| |||||| |||||||||| |||||| |||||||
Sbjct: 1362 gagcggatcgacatagcgcattagatagcattt-gggagatcag-ttgaag-ttgcaat- 1307
Query: 687 cgatcagatagaaa 700
||||||||||||||
Sbjct: 1306 cgatcagatagaaa 1293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,030
Number of Sequences: 1807
Number of extensions: 15030
Number of successful extensions: 313
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)