BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC06RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1231 0.0
>3x_Contig1186
Length = 4633
Score = 1231 bits (621), Expect = 0.0
Identities = 712/738 (96%), Gaps = 4/738 (0%)
Strand = Plus / Plus
Query: 49 aattaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aattaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactg 958
Query: 109 atttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagttta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 atttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagttta 1018
Query: 169 ctgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattcttga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattcttga 1078
Query: 229 agccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 agccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaaga 1138
Query: 289 aaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 aaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagac 1198
Query: 349 caaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 caaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccat 1258
Query: 409 ttagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 ttagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaa 1318
Query: 469 aaacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 aaacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgt 1378
Query: 529 taacgtatttaatttgtctatatgtgtgagacanaatccanaacatactcttacattact 588
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1379 taacgtatttaatttgtctatatgtgtgagacaaaatccaaaacatactcttacattact 1438
Query: 589 tattttttgatattggattgttttgaagtacanaactatggcaggtgagcccttttggat 648
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1439 atttttttgatattggattgttttgaggtacaaaactatggcaggtgagccctattggat 1498
Query: 649 caaccacggagcaattgagagatttcaacgatgtcattcatttttgctttgggcatcatt 708
|||||| | ||||||||||||| |||||||||||||||| | |||||||| |||||||
Sbjct: 1499 caaccaggaggcaattgagagatatcaacgatgtcattca-tcttgctttgagcatcatc 1557
Query: 709 ttcatcaccgacggataaaatgggttctttgggtgagacataataccttgatcttggcac 768
|||||||||||| ||| |||||||||| |||| ||| ||| ||||| |||||||| |||
Sbjct: 1558 ttcatcaccgacagat-aaatgggttc-ttggtagagccatcatacc-tgatcttgccac 1614
Query: 769 tttcaaaataccgaaagg 786
|| ||| |||||||||||
Sbjct: 1615 ttccaagataccgaaagg 1632
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8418
Number of Sequences: 1807
Number of extensions: 8418
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)