BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC07FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 1172 0.0
>3x_Contig959
Length = 3065
Score = 1172 bits (591), Expect = 0.0
Identities = 648/663 (97%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 87 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 2186
Query: 147 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 2246
Query: 207 attctatttttatctatctttgaccaaggcaatcgataccagataacttcaaatgttctt 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 attctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgttctt 2306
Query: 267 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 2366
Query: 327 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 2426
Query: 387 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 2486
Query: 447 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 2546
Query: 507 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatcag 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatca- 2605
Query: 567 tttttgc-actgttgcaatgacctttttttcgactttgattgtacaaatcttctctttgg 625
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 2606 tttttgcaactgttgcaatgacctttttctcgactttgattgtacaaatcttctcttcgg 2665
Query: 626 ttatcaaataccacagtaccagcacacttgagaca-ggggaaagctatcgtgggggttcc 684
||||||| |||||||||| ||||||||||||||| |||| || |||||||||||||||
Sbjct: 2666 ttatcaattaccacagtattagcacacttgagacatggggttagttatcgtgggggttcc 2725
Query: 685 atcatcaaggaatgacttgatcgaaccctgcttcaacgctgtttctttttcttgcttggt 744
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 2726 atcatcaaggaatgacttgatcgaaccctgcttcaacgctgtttctctttctgccttggt 2785
Query: 745 gac 747
|||
Sbjct: 2786 gac 2788
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6481
Number of Sequences: 1807
Number of extensions: 6481
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)