BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZC07RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1757                                                        1360   0.0  

>3x_Contig1757 
          Length = 24754

 Score = 1360 bits (686), Expect = 0.0
 Identities = 862/901 (95%), Gaps = 19/901 (2%)
 Strand = Plus / Minus

                                                                         
Query: 49    cttcaattcagtggcttgtttaaggttcatatcctctagttctttggcataattgagctg 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10756 cttcaattcagtggcttgtttaaggttcatatcctctagttctttggcataattgagctg 10697

                                                                         
Query: 109   ctccttcagagtcttgttcaagacagccaaatcttgtaattcttccgtagaattgttcct 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10696 ctccttcagagtcttgttcaagacagccaaatcttgtaattcttccgtagaattgttcct 10637

                                                                         
Query: 169   atgagacgcagaagtttgaactgatcgtagttcagatatcagattttctttttccttcag 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10636 atgagacgcagaagtttgaactgatcgtagttcagatatcagattttctttttccttcag 10577

                                                                         
Query: 229   ttcttgttgtaaatatcgtatctcttccacatgtttgtttatctgagtttcatgttgatg 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10576 ttcttgttgtaaatatcgtatctcttccacatgtttgtttatctgagtttcatgttgatg 10517

                                                                         
Query: 289   cagaatgtttccgctaccttcaatttccaacttcatcgattcaattgcattcgtaacttc 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10516 cagaatgtttccgctaccttcaatttccaacttcatcgattcaattgcattcgtaacttc 10457

                                                                         
Query: 349   attttgttttgaggaaagcttatgagctaattccacgatacgctgctctttcaaattaac 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10456 attttgttttgaggaaagcttatgagctaattccacgatacgctgctctttcaaattaac 10397

                                                                         
Query: 409   ttcgtttttcaaacttacaacctgtgttcgaagtgtcgttatgatcttctcatcctcctt 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396 ttcgtttttcaaacttacaacctgtgttcgaagtgtcgttatgatcttctcatcctcctt 10337

                                                                         
Query: 469   cggtaacgcatccttacttttcaattcttccttcaacttgatgttntcctcatatagtat 528
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10336 cggtaacgcatccttacttttcaattcttccttcaacttgatgttttcctcatatagtat 10277

                                                                         
Query: 529   cttggtatctttcaaagcattttccagttcgttcatactcttatcgtatttgttctgaag 588
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10276 cttggtatctttcaaagcattttccagttcgttcatactcttatcgtatttgttctgaag 10217

                                                                         
Query: 589   cgaataagtctcgcgttctgatgacaacttcganatttcatactcgttctgtaaggttgt 648
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10216 cgaataagtctcgcgttctgatgacaacttcgaaatttcatactcgttctgtaaggttgt 10157

                                                                         
Query: 649   gtatttgtactgaagcgttaaaacgcgacgtctcaactgatctgcatctagcgattcaag 708
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 10156 gtatttgtactgaagcgttaaaacgcgacgtctcaactgatctgcatctagcgattcaa- 10098

                                                                         
Query: 709   gggggcttttccttttatctgagggtggttagtgacatattaatacacaaattgagtttg 768
              ||||||||||| |||||||||||   |||||||||||| |||||||| |||||||||| 
Sbjct: 10097 -ggggcttttcc-tttatctgagg--tgttagtgacata-taatacac-aattgagttt- 10045

                                                                         
Query: 769   gacacaattggccagacactatttggcatgaaaccattcctttagtttccccttaagat- 827
             ||||||||| || |||||||| |||||||| || ||||| || ||||  ||| |||||| 
Sbjct: 10044 gacacaatt-gcaagacacta-ttggcatg-aagcattctttaagtt--cccctaagatc 9990

                                                                         
Query: 828   acttaaatggattcaggaccaaggtcagaatttttgctttaaaatttttaaatccgaatg 887
             |||| |||||| ||| || ||| ||||  ||||| ||| ||||||| | ||||| |||| 
Sbjct: 9989  actt-aatgga-tcaagatcaaagtcaagattttcgctataaaattataaaatcagaat- 9933

                                                                         
Query: 888   gaattggagaaacgtttaaatcattcccctttaaagatgatcaagaaagggggacgggga 947
             ||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 9932  gaaatgaagaaacgtttaaatca-tcccctttaaagatgatcaagaaa-ggggacgggga 9875

              
Query: 948   t 948
             |
Sbjct: 9874  t 9874


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7767
Number of Sequences: 1807
Number of extensions: 7767
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)