BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC08FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1296 0.0
>3x_Contig1253
Length = 5628
Score = 1296 bits (654), Expect = 0.0
Identities = 693/702 (98%), Gaps = 3/702 (0%)
Strand = Plus / Minus
Query: 86 tagagaattcggggaaagctacatggagtcggcgttgccgttctctttcacagaattcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tagagaattcggggaaagctacatggagtcggcgttgccgttctctttcacagaattcaa 1382
Query: 146 taccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccgtggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 taccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccgtggc 1322
Query: 206 agctaacaattattatccatacattgtcacaggttctgacgatggctttctgaaaatctg 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agctaacaattataagccatacattgtcacaggttctgacgatggctttctgaaaatctg 1262
Query: 266 ggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagctagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagctagg 1202
Query: 326 atcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcagcaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcagcaaa 1142
Query: 386 tgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcgaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcgaaat 1082
Query: 446 acaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggcacttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 acaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggcacttc 1022
Query: 506 tttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatggtcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatggtcg 962
Query: 566 tattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgcccgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgcccgt 902
Query: 626 gtatggttcagtttcaacttcgtctgttagttctgacggtcattggctactatgtgggac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 901 gtatggttcagtttcaacttcgtctgttagttctgacggtcattggctactatgtggaac 842
Query: 686 aacacacggagcattacttcttttggatctcacatttaaaatttttggtgaattcttggt 745
||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 841 aacacacggagcattacttctttggaatctcacatttaaaa-ttttggtgaaatcttgg- 784
Query: 746 tgttttggagatgaaaagtcctattcgcaaggtcattctttt 787
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 783 tgttttggagatg-aaagtcctattcgcaaggtcattctttt 743
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8318
Number of Sequences: 1807
Number of extensions: 8318
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)