BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1061 0.0
>3x_Contig1606
Length = 11468
Score = 1061 bits (535), Expect = 0.0
Identities = 558/562 (99%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 48 attattcctcattcattcttgagaattctagtggcaaatgctgatatagttaagaattct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8864 attattcctcattcattcttgagaattctagtggcaaatgctgatatagttaagaattct 8923
Query: 108 ggattatgatttgaagtgtgtgcgctgagtgctagtattcgatttgtcaactagctggat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8924 ggattatgatttgaagtgtgtgcgctgagtgctagtattcgatttgtcaactagctggat 8983
Query: 168 agttctttcttctgcttttctttttctaatgatgtgacttatgataatgaagatcttcgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8984 agttctttcttctgcttttctttttctaatgatgtgacttatgataatgaagatcttcgg 9043
Query: 228 ttcctctacttattccaatttaacccaaagacggaccttcttctcctttggttgtttatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9044 ttcctctacttattccaatttaacccaaagacggaccttcttctcctttggttgtttatc 9103
Query: 288 attctgtctgatatccgcatcaatagatctttccctgttctcaaaacatttcctttcaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9104 attctgtctgatatccgcatcaatagatctttccctgttctcaaaacatttcctttcaaa 9163
Query: 348 cttcatatggactattaatctgacacttcccaatatcatagttgttgattcttccatatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9164 cttcatatggactattaatctgacacttcccaatatcatagttgttgattcttccatatg 9223
Query: 408 ctttctgtctttgttgttgncttcttctgactttaacccaacacgttcacattcagtaat 467
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9224 ctttctgtctttgttgttgtcttcttctgactttaacccaacacgttcacattcagtaat 9283
Query: 468 caccttttc-aaactcttt-aacgggtatcaataat-acatacttgtttcttctgtggac 524
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 9284 caccttttcaaaactctttaaacgggtatcaataataacatacttgtttcttctgtggac 9343
Query: 525 acgtaactttctagcggagttcaaacctcttggcttacccttacccatcttgctcgattg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9344 acgtaactttctagcggagttcaaacctcttggcttacccttacccatcttgctcgattg 9403
Query: 585 ttctttactgcttgatgtaaaa 606
||||||||||||||||||||||
Sbjct: 9404 ttctttactgcttgatgtaaaa 9425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7985
Number of Sequences: 1807
Number of extensions: 7985
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)