BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC09FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1086 0.0
>3x_Contig826
Length = 2477
Score = 1086 bits (548), Expect = 0.0
Identities = 660/688 (95%), Gaps = 7/688 (1%)
Strand = Plus / Minus
Query: 87 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacaca 870
Query: 147 ttctactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttctactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggctt 810
Query: 207 gacgtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gacgtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 750
Query: 267 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 690
Query: 327 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 630
Query: 387 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 570
Query: 447 aaaacgaaccaaaactgtggcaaacaccaggggagaagtagtaaccttctatttgatatg 506
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 569 aaaacgaaccaaaactgtggcaaacacca-gggagaagtagtaa-cttctatttgatatg 512
Query: 507 atgtaatatgatctatatatatatatccatatatatttatattcatatttacataattat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atgtaatatgatctatatatatatatccatatatatttatattcatatttacataattat 452
Query: 567 atacatatcggatcatttcaaaatc-acacatagcgaaagggaatgatgcattagagaac 625
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 451 atacatatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaac 392
Query: 626 caagcagagcatacccaggg-cagaaactcatttggaaaaccccatat-cacagcacagg 683
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 391 aaagcagagcatacccagggccagaaactcatctggaaaaccccatatacacagcacaga 332
Query: 684 accttgcccttgtaccggaaggaaaaaacgatttccgatgggaacgag-agtcaaaaagg 742
||| ||| | || |||| ||||||||| || | | || |||||||| |||||||||||
Sbjct: 331 accatgcacatgaaccgaaaggaaaaacagaatacagaatggaacgagaagtcaaaaagg 272
Query: 743 -aaacagatggggaagtcttttaaaaga 769
||||||| ||||||||| ||| ||||
Sbjct: 271 aaaacagaatgggaagtctcttagaaga 244
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,488
Number of Sequences: 1807
Number of extensions: 10488
Number of successful extensions: 393
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)