BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZC09RM1.SCF screened BAC_end
         (873 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1704                                                        1076   0.0  

>3x_Contig1704 
          Length = 14855

 Score = 1076 bits (543), Expect = 0.0
 Identities = 608/623 (97%), Gaps = 5/623 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   tcattgacattgtcactattctt-aacatgagtaccaaa-caaggctggaaagccaactt 106
            ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 8506 tcattgacattgtcactattcttcaacatgagtaccaaaacaaggctggaaagccaactt 8565

                                                                        
Query: 107  gggcagaatttcaggttacgagatcacccaagatcattgtcattactatatgaaaaagct 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8566 gggcagaatttcaggttacgagatcacccaagatcattgtcattactatatgaaaaagct 8625

                                                                        
Query: 167  ttctctgatatgggaacagagatatatgattcttttatacccgaaactattgctactgaa 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8626 ttctctgatatgggaacagagatatatgattcttttatacccgaaactattgctactgaa 8685

                                                                        
Query: 227  tccgttgaaatgtcagaatgtaatatgaatttggcaactattcattcagagtttgggaaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8686 tccgttgaaatgtcagaatgtaatatgaatttggcaactattcattcagagtttgggaaa 8745

                                                                        
Query: 287  aaatggtctcatctctcattcaatgtggtagagattgacatttgccagctcactggtgat 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8746 aaatggtctcatctctcattcaatgtggtagagattgacatttgccagctcactggtgat 8805

                                                                        
Query: 347  ctattaattactagattcgatacagtacgcaacaaacaccttcatttacgtttacctttg 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8806 ctattaattactagattcgatacagtacgcaacaaacaccttcatttacgtttacctttg 8865

                                                                        
Query: 407  aatcgtcataattccagagacctttcggaagaggtcttgggttttgaagccgccctcgat 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8866 aatcgtcataattccagagacctttcggaagaggtcttgggttttgaagccgccctcgat 8925

                                                                        
Query: 467  gagttaaaccatatcatttctttcaacatttgtaccacttcatttgaagttaccttcgtc 526
            |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||
Sbjct: 8926 gagttaaaccatatcatttcttccaacaattgtaccacttcaattgaagttacctcggtc 8985

                                                                        
Query: 527  attaccaccaaag-acaaaagaag-actggtgggatgaaaggtatgctttgaacaatcga 584
            ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 8986 attaccaccaaagaacaaaggaagaactggtgggatgaaaggtatgctttgaacaatcga 9045

                                                                        
Query: 585  cttcaaactcttctcactaaaattgaggattcatgggtttgtgggttcaaaagagttttt 644
            || ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 9046 ctccaaactcttctcactaaaattgaggattcatggttttgtgggttcaaaggagttttt 9105

                                   
Query: 645  tacccaag-atagttgatcagca 666
             ||||||| ||||||||||||||
Sbjct: 9106 aacccaagaatagttgatcagca 9128


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,687
Number of Sequences: 1807
Number of extensions: 12687
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)