BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC10FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig941 1318 0.0
>3x_Contig941
Length = 3149
Score = 1318 bits (665), Expect = 0.0
Identities = 779/810 (96%), Gaps = 7/810 (0%)
Strand = Plus / Plus
Query: 87 cacttcactggcagtattcttatcattagcatactcagctgcaacagaagtggcatcctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cacttcactggcagtattcttatcattagcatactcagctgcaacagaagtggcatcctt 294
Query: 147 gggcacttccaacacacttataagcgcattaacgaaatcctgctgttgttgcaaagaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gggcacttccaacacacttataagcgcattaacgaaatcctgctgttgttgcaaagaaac 354
Query: 207 accacctgccccggcactagcattaatacccgtgcctgtattcacaacattattcataac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accacctgccccggcactagcattaatacccgtgcctgtattcacaacattattcataac 414
Query: 267 cgcattagaatcgcctcgatagtaaaaaccgccagcgccacttccgccgttaccttgttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cgcattagaatcgcctcgatagtaaaaaccgccagcgccacttccgccgttaccttgttg 474
Query: 327 tatctgaacgtgcgactgagacatcatgatgaactaaaaggaaaaaaacacaaaggatcc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tatctgaacgtgcgactgagacatcatgatgaactaaaaggaaaaaaacacaaaggatcc 534
Query: 387 aaacaaaggctgggatttgaaccagaataaacagacaataaaaattagtaaggcttactt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaacaaaggctgggatttgaaccagaataaacagacaataaaaattagtaaggcttactt 594
Query: 447 tactgataaaaagaaaaataaagaaaaccgcacacgctcaaatcaaaacagccgagctgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tactgataaaaagaaaaataaagaaaaccgcacacgctcaaatcaaaacagccgagctgt 654
Query: 507 acaaatatcttttgatagcctgatcttgaatatacaacgattttactgactttaaccgct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 acaaatatcttttgatagcctgatcttgaatatacaacgattttactgactttaaccgct 714
Query: 567 gaatcctttgaattccataaccactgattcanaaagctagatattggttgttattgttat 626
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 715 gaatccttgaaattccataaccactgattcaaaaagctagatattgtttgttattgttat 774
Query: 627 agagttaatccaatgttgattcaattttattgtatgtgaaaaattcaaaatttgttttgg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 775 agagttaatccaatgttgattcaattttattgtatgtgaaaaattcaaaattttgtttgg 834
Query: 687 t-aacaaagcattgtcaac-aaaccaaacaaatttaaaaaatt--aaaaaaaaaaaacga 742
| |||||||||||| |||| |||| ||||||| | |||||| | |||||||||||||||
Sbjct: 835 taaacaaagcattgacaacaaaacaaaacaaaataaaaaaaataaaaaaaaaaaaaacga 894
Query: 743 naaact-aagaatggtttgggatactcttagataagacagtacttatttagaggacgtag 801
||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 895 aaaactaaagaatggtatgggatactcttagataagacagtacttatctagaggacgtag 954
Query: 802 tttcaggatcattgtgtccgatgtgaagaacggtatttgttgtccgaaaaa-gggaaaaa 860
|||||||||||| |||| |||||||| | |||| |||||||| ||||||| |||||||
Sbjct: 955 tttcaggatcatcgtgtacgatgtgagggacggaatttgttgcacgaaaaaggggaaaag 1014
Query: 861 ctgcacattttgatttgaaatgcaaaagat 890
||||||| |||||| ||| |||||||||||
Sbjct: 1015 ctgcaca-tttgatctgagatgcaaaagat 1043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,354
Number of Sequences: 1807
Number of extensions: 14354
Number of successful extensions: 205
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)