BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC10RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1084 0.0
>3x_Contig1642
Length = 16641
Score = 1084 bits (547), Expect = 0.0
Identities = 632/656 (96%), Gaps = 4/656 (0%)
Strand = Plus / Minus
Query: 47 aatacgagaatatttacatttattgaccgtctctaaaaagcttttccaacagcagtatgg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2596 aatacgagaatatttacatttattgaccgtctctaaaaagcttttccaacagcagtatgg 2537
Query: 107 ttaaacttgaccgtgttgctattactcaggaacttgtagacctaccttgttagcagtctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2536 ttaaacttgaccgtgttgctattactcaggaacttgtagacctaccttgttagcagtctt 2477
Query: 167 ttgaactttttcctcttgtgacattttcaatcctggattatatctttcgatcaactgctc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2476 ttgaactttttcctcttgtgacattttcaatcctggattatatctttcgatcaactgctc 2417
Query: 227 gtattcactttgattgacaacaaaggccgcaatatctttcaaatgttgaagagaacgcgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 gtattcactttgattgacaacaaaggccgcaatatctttcaaatgttgaagagaacgcgg 2357
Query: 287 gtcatctttcagcgatagaacaatatctttgagatgtttgctatggctgtaaaataatag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 gtcatctttcagcgatagaacaatatctttgagatgtttgctatggctgtaaaataatag 2297
Query: 347 ctctttagatttcaatgggtccttagtcttcaaaatttcaattttttttccaaccgcact 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2296 ctctttagatttcaatgggtccttagtcttcaaaatttcaattttttttccaaccgcact 2237
Query: 407 gagctgttttaataccttgcttcttgccattgcatctaggcccttctcctgctgttgtct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 gagctgttttaataccttgcttcttgccattgcatctaggcccttctcctgctgttgtct 2177
Query: 467 cactaattggatcctattgtatgtcaataaagctatttgtttctttgtatcttgctgnaa 526
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 2176 cactaattggatcctattgtatgtcaataaggctatttgtttctttgtatcttgctgtag 2117
Query: 527 ttgttggatttta-tgtgncncgcactacggacaagtgatctcaatagtgacttatttgt 585
||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 2116 ttgttggattttattgtgcttcgcactacggacaagtgatctcaatagtgacttatatgt 2057
Query: 586 tgataacgttagctcactcattggatgaatctttaaataatcctatattatcactgctct 645
|||||||||||||||||||||| ||| ||| |||| || |||||||||||||||||
Sbjct: 2056 cgataacgttagctcactcattgtatg-atccttaatatattctatattatcactgctc- 1999
Query: 646 tggaagataatgattagtgggaaatttcctataatgcctattataatatggcaagg 701
|| |||||||||| ||| ||| || |||||||||||||||||||||||| |||||
Sbjct: 1998 tgtgagataatgataagt-ggagatatcctataatgcctattataatatgtcaagg 1944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,547
Number of Sequences: 1807
Number of extensions: 10547
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)