BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC11FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1415 0.0
>3x_Contig1303
Length = 8112
Score = 1415 bits (714), Expect = 0.0
Identities = 752/762 (98%), Gaps = 2/762 (0%)
Strand = Plus / Minus
Query: 85 aatggatttcaaaatgtgtgtatttgagatatatctacatagtaataaataccgacacac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 aatggatttcaaaatgtgtgtatttgagatatatctacatagtaataaataccgacacac 4647
Query: 145 agatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaagaatat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 agatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaagaatat 4587
Query: 205 gtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccaagacaattgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 gtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccaagacaattgg 4527
Query: 265 ttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttcagca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 ttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttcagca 4467
Query: 325 gattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtcacct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 gattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtcacct 4407
Query: 385 ctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgaccttgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 ctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgaccttgc 4347
Query: 445 ttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgtaagac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 ttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgtaagac 4287
Query: 505 aatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaaagct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 aatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaaagct 4227
Query: 565 tcggttggagtaaccaacttaataccaaccaatttgtaacctctgtcttcaaaacgagct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 tcggttggagtaaccaacttaataccaaccaatttgtaacctctgtcttcaaaacgagct 4167
Query: 625 aagatcttagagatcaaacctctttgaacaccatctggcttgatagcaatgaaagttctt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166 aagatcttagagatcaaacctctttgaacaccatctggcttgatagcaatgaaagttctt 4107
Query: 685 tcagtgttagacatttttctcgagttagttaatacgtgattctgtgtacgatcctgcttt 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4106 tcagtgttagacatttttctcgagttagttaatacgtgattctgtgtacgatcctgctat 4047
Query: 745 gaactaagaatcaagggaacataagccatcgctacccccagagtttgaaataaagtgcat 804
|||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 4046 gaactaagaatcaatggaacataagcaatcgctaaccccagaagttgaaataaagtgcat 3987
Query: 805 ggaaaaaaaaaagttacttgcaaattgaaat-aacgaaattg 845
||||| || |||||||| ||||||||||||| ||||||||||
Sbjct: 3986 ggaaagaagaaagttac-tgcaaattgaaatcaacgaaattg 3946
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8595
Number of Sequences: 1807
Number of extensions: 8595
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)