BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC12FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1596 1312 0.0
>3x_Contig1596
Length = 11686
Score = 1312 bits (662), Expect = 0.0
Identities = 695/706 (98%), Gaps = 1/706 (0%)
Strand = Plus / Plus
Query: 86 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 557
Query: 146 ccttttaaaaaaaaaaagcgtgttagagaagaacctcttagcacagtttccggcttgctt 205
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttttaaaaaaaaaaagcgtgaaagagaagaacctcttagcacagtttccggcttgctt 617
Query: 206 aatatgtcnnctaactgcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 265
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatatgtcttcgaacggcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 677
Query: 266 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 737
Query: 326 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 797
Query: 386 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 857
Query: 446 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 917
Query: 506 cctccaaataaaaacgctgctgcttctaacacaatccctgcctcgtctgcatcagccact 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 cctccaaataaaaacgctgctgcttctaacacaatccctgcctcgtctgcatcagccact 977
Query: 566 gcgattacaggaagtactaccactgcaaaacctgtttcaaatccttcgatgcccttgaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gcgattacaggaagtactaccactgcaaaacctgtttcaaatccttcgatgcccttgaaa 1037
Query: 626 agagataacaacggccaattgataaaaccgcaacaggtgacacccttgcactattttaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 agagataacaacggccaattgataaaaccgcaacaggtgacacccttgcactattttaga 1097
Query: 686 gcttactcaatgttgaaaaattggatcgattcgtcttta-nattgtacaaacctgagcta 744
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1098 gcttactcaatgttgaaaaattggatcgattcgtctttagaattgtacaaacctgagcta 1157
Query: 745 tcacgtattatatacccgatttttatttacgtttttttacagntgg 790
|||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct: 1158 tcacgtatcatatacccgattttcatttacgtttttttacagttgg 1203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9896
Number of Sequences: 1807
Number of extensions: 9896
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)