BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZC12RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1166 0.0
>3x_Contig1711
Length = 15491
Score = 1166 bits (588), Expect = 0.0
Identities = 661/679 (97%), Gaps = 6/679 (0%)
Strand = Plus / Plus
Query: 47 aacgaatgcaccagtattatcatacctagtgctttattcagcatgaaatatacataaatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 aacgaatgcaccagtattatcatacctagtgctttattcagcatgaaatatacataaatg 9552
Query: 107 tacgtatatatatgaatacactcactattcatcattaataattagaatagaagaatcttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 tacgtatatatatgaatacactcactattcatcattaataattagaatagaagaatcttt 9612
Query: 167 catcctattttcgttaatacatagtttaaagccaacttccaaaagatcacaggcctcaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 catcctattttcgttaatacatagtttaaagccaacttccaaaagatcacaggcctcaat 9672
Query: 227 ggtcacaaagaaaggctgtgacataattatacacatgtgatcttgctgctcgtgtcacct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 ggtcacaaagaaaggctgtgacataattatacacatgtgatcttgctgctcgtgtcacct 9732
Query: 287 ttattcgagatactattcgaaaccttgtttttctgttcctgattcgtcagcctctctgtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 ttattcgagatactattcgaaaccttgtttttctgttcctgattcgtcagcctctctgtc 9792
Query: 347 tttgcagaaggaaagcaagccatgataaatatccgaaaaagaataaaaagtcagaacaaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tttgcagaaggaaagcaagccatgataaatatccgaaaaagaataaaaagtcagaacaaa 9852
Query: 407 gaatcaaacacttttcaaagaaggtacactctgcaaagatcttttggtcaattgcaggtg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9853 gaatcaaacacttttcaaagaaggtacactctgcaaagatcttttggtcaattgcaggtg 9912
Query: 467 atactgatttattttttgtactcatattggcacggttatgtccatacgtaatacaatcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9913 atactgatttattttttgtactcatattggcacggttatgtccatacgtaatacaatcaa 9972
Query: 527 tagaatcattattagaagaaacatgtctgattcgattaggcactacgattatctagttat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9973 tagaatcattattagaagaaacatgtctgattcgattaggcactacgattatctagttat 10032
Query: 587 tggggggtggttctgggtggtgttgcctcttcttagagagctgcattttatggtgccagg 646
| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
Sbjct: 10033 t-gggggtggttct-ggtggtgttgcctcttctagaagagctgcatcttatggtgccaag 10090
Query: 647 accttgttgatctaaggcaaagccatgggggggttcttgtgttaattaaagggttgcgtt 706
|||||||||||| | | ||||||||| ||| ||| ||||||||||| || |||||||||
Sbjct: 10091 accttgttgatcgaggccaaagccat-gggtggtacttgtgttaat--aaaggttgcgtt 10147
Query: 707 ccttaacaaggttatgtgg 725
|| ||| ||||||||||||
Sbjct: 10148 cc-taagaaggttatgtgg 10165
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7526
Number of Sequences: 1807
Number of extensions: 7526
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)