BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD02FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 1362 0.0
>3x_Contig1174
Length = 6106
Score = 1362 bits (687), Expect = 0.0
Identities = 812/842 (96%), Gaps = 12/842 (1%)
Strand = Plus / Plus
Query: 87 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 4980
Query: 147 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 5040
Query: 207 acttgaagaaagtatgattgagtcccgaattacaagaattcttaaaagtggaagagatgc 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 acttgaagaaagtaggattgagtcccgaattacaagaattcttaaaagtggaagagatgc 5100
Query: 267 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgaccttcagaacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgaccttcagaacc 5160
Query: 327 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 5220
Query: 387 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 5280
Query: 447 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 5340
Query: 507 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 5400
Query: 567 actcgtctttatcctctaactnttatgtcttggcatctaattatgtaccatcgatctgta 626
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 actcgtctttatcctctaacttttatgtcttggcatctaattatgtaccatcgatctgta 5460
Query: 627 tctaaattcttgaagagtccgcctttatgaaacttggatctctaantanacaaacaaata 686
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5461 tctaaattcttgaagagtccgcctttatgaaacttggatctctaataaacaaaacaaata 5520
Query: 687 cataagaacgaaccttaaaagacacaaaccgaccaaaatagcggacagttttcggaggcg 746
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 5521 cataagaacgaaccttaaaagacacaaaccgaccaaaatagcggacagtttcggtaggcg 5580
Query: 747 aaagtatccatgaaccagtttaggatattatccacagattcttcgttttctaccccttca 806
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5581 aaggtatccatgaaccagtttaggatattatccacagattcttcgttttctaccccttca 5640
Query: 807 ctggggaaaaacgtttgaactttgtttcccttgggacacttgttatttcttttatgcaat 866
|| |||| ||||||||| |||||| ||||||| ||||||| |||||| ||||||| ||
Sbjct: 5641 ct-gggagaaacgtttg-actttg-ttccctt-ggacactggttatt--ctttatgcgat 5694
Query: 867 gaaccttggatctggtatacttccaacgtaattaagggggagttttatttggcgtacatt 926
| ||||| |||||||||||| ||||||||| | || || |||||||||| |||||||||
Sbjct: 5695 g-acctt-gatctggtatac-tccaacgtattaaa--ggtagttttattt-gcgtacatt 5748
Query: 927 aa 928
||
Sbjct: 5749 aa 5750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9291
Number of Sequences: 1807
Number of extensions: 9291
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)