BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD02RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1227 1453 0.0
>3x_Contig1227
Length = 6330
Score = 1453 bits (733), Expect = 0.0
Identities = 777/788 (98%), Gaps = 3/788 (0%)
Strand = Plus / Minus
Query: 49 gcgttgaacttcgtcggaatagttgggaatcgtgatgaaatctttgctgataatctaagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6135 gcgttgaacttcgtcggaatagttgggaatcgtgatgaaatctttgctgataatctaagt 6076
Query: 109 gagacgatattcggaattcttagatctcctgtctcatcagccattttgaaaagaaaagca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6075 gagacgatattcggaattcttagatctcctgtctcatcagccattttgaaaagaaaagca 6016
Query: 169 tgcttggcgtttttaactttaattcgttataaaccgcaaatccttacattttttgaagat 228
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 6015 tgcttggcgtttttaactttaattcgttataaaccgcaaatccttacaaatcttgaagat 5956
Query: 229 aataaacgaactctatggattgaaagaattactacattattaggggatgagaacgatcat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5955 aataaacgaactctatggattgaaagaattactacattattaggggatgagaacgatcat 5896
Query: 289 ggattattactttcacttttgcctttacttgagtttatagctagagagattgacgttaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5895 ggattattactttcacttttgcctttacttgagtttatagctagagagattgacgttaat 5836
Query: 349 ccatgtttgaggttaatcccgcaactagctgagattttgcatgaatgtctatcgaaaaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5835 ccatgtttgaggttaatcccgcaactagctgagattttgcatgaatgtctatcgaaaaag 5776
Query: 409 cagaatagtgcaaatgatgcagattaccaattttcgggagtatctaacccatggattgta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5775 cagaatagtgcaaatgatgcagattaccaattttcgggagtatctaacccatggattgta 5716
Query: 469 gggaattgtgtatctcttttacaagtcttggtcagcgataacggagagaatttgatcgga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5715 gggaattgtgtatctcttttacaagtcttggtcagcgataacggagagaatttgatcgga 5656
Query: 529 tcgaatattgatcaacagaccctgngtaagttacgggtttgtgtatcacatgcggtatcg 588
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5655 tcgaatattgatcaacagaccctgggtaagttacgggtttgtgtatcacatgcggtatcg 5596
Query: 589 tttgcattagcaagtgatgccaatccggtcaccaaaaatgctcagtattctgttatgttt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5595 tttgcattagcaagtgatgccaatccggtcaccaaaaatgctcagtattctgttatgttt 5536
Query: 649 acaatgctcggttttgcttgtaaactggatcctactaatgaggctattttcaaattccgt 708
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5535 acaatgctcggttttgcttgtaaactggatcctactaatgaggcta-tttcaaattccgt 5477
Query: 709 cacaggactttgtgaactaatgacatctaatgaccctgaatacgagatattcaactttcg 768
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5476 cacaggactttgtgaactaatgacatctaatga-cctgaatacgagatattcaactttcg 5418
Query: 769 atcttttaatcaaaatcttgtaagttaaatgggacaactgcgatatagacaattcaaaat 828
||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||
Sbjct: 5417 atcttttaatcaaaatc-tgtaaagtaaatggaacaactgcgataaagacaattcaaaat 5359
Query: 829 gaacatct 836
||||||||
Sbjct: 5358 gaacatct 5351
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6790
Number of Sequences: 1807
Number of extensions: 6790
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)