BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD04FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 1057 0.0
>3x_Contig1544
Length = 10626
Score = 1057 bits (533), Expect = 0.0
Identities = 581/593 (97%), Gaps = 3/593 (0%)
Strand = Plus / Minus
Query: 87 ccgtttactaggcttcttaccggtctccttggcgtattgctgggatctatccatcactgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 ccgtttactaggcttcttaccggtctccttggcgtattgctgggatctatccatcactgc 7229
Query: 147 cttttggatgtctttctggaaaatagtgctcttcatgagagcattcttcaattgttgcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 cttttggatgtctttctggaaaatagtgctcttcatgagagcattcttcaattgttgcaa 7169
Query: 207 gaaactgttggaggtaaccccactaggcttctcaatagcaaatataccgttcatttgggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 gaaactgttggaggtaaccccactaggcttctcaatagcaaatataccgttcatttgggc 7109
Query: 267 gtcacaatatcgatgctggttcctagaattgtataaacctattggtttatctcatctcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 gtcacaatatcgatgctggttcctagaattgtataaacctattggtttatctcatctcat 7049
Query: 327 ctcatctcttggataactggctgagatgacttcatattcgaagcgatgtaaaagaaagaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 ctcatctcttggataactggctgagatgacttcatattcgaagcgatgtaaaagaaagaa 6989
Query: 387 a-tttcaagtcacgtgctgtaatgtgcacgtgatccagattgttttttctgataacttgg 445
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988 attttcaagtcacgtgctgtaatgtgcacgtgatccagattgttttttctgataacttgg 6929
Query: 446 atgaacccagacacctcattgtaccggaagatcacagccccattgtcagatctgctttcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6928 atgaacccagacacctcattgtaccggaagatcacagccccattgtcagatctgctttcc 6869
Query: 506 catacagaaaagaccgcagctcttatcattttctcaactagcatgaaaccgtacatactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6868 catacagaaaagaccgcagctcttatcattttctcaactagcatgaaaccgtacatactt 6809
Query: 566 aattcaatgtacttggcataacattacagcaccttacgcagcaagtgctgttcattcac- 624
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 6808 aattcaatgtacttggcataacattacagcaccttacgcagcaggtgctgtacattcact 6749
Query: 625 tacattgattcccagtccagcaacccctttgccacgtttaacgtttgttcctt 677
||||| || |||||||||||| | ||| ||| ||||| |||||| ||||||||
Sbjct: 6748 tacataga-tcccagtccagcgaaccccttgtcacgtctaacgtctgttcctt 6697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8373
Number of Sequences: 1807
Number of extensions: 8373
Number of successful extensions: 413
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)