BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD04RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1118 0.0
>3x_Contig1744
Length = 24119
Score = 1118 bits (564), Expect = 0.0
Identities = 656/676 (97%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 49 taccaaacctattgtggttgtcgatttacctt-acccaaaggagttggagtaataccggc 107
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15921 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 15980
Query: 108 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15981 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 16040
Query: 168 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16041 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 16100
Query: 228 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16101 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 16160
Query: 288 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16161 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 16220
Query: 348 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16221 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 16280
Query: 408 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16281 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 16340
Query: 468 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacattcat 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16341 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 16400
Query: 528 gacgatagcatcttgcttt-accagtttggtttgaccatgtttggcacaccacaagc-gc 585
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16401 gacgatagcatcttgctttaaccagtttggtttgaccatgtttggcacaccacaagcagc 16460
Query: 586 tatgactacatcggcattttttac-acatcggcaatgtt-ttagtgtatttattgc-aat 642
|||||||||||||||||||||||| |||||||||||||| | ||||||| ||| || |||
Sbjct: 16461 tatgactacatcggcattttttacaacatcggcaatgttctcagtgtatctatggcaaat 16520
Query: 643 tgtgactgttgca-ttaaattcttttacaatgatgcaacggaagtgtccacaaatgtccg 701
||||||||||||| |||||| |||| ||||||||||||||| ||| |||| |||||| |
Sbjct: 16521 tgtgactgttgcatttaaatcctttaacaatgatgcaacgggagttcccac-aatgtcag 16579
Query: 702 attttccaataacaac 717
|| |||||||||||||
Sbjct: 16580 atcttccaataacaac 16595
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6064
Number of Sequences: 1807
Number of extensions: 6064
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)